Bioconductor MethylationArray

Showing : MethylationArray • reset

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

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782

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linearregression epicarray MethylationArray limma

8 months ago Jitendra ▴ 10

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719

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MethylationArray methylationArrayAnalysis

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by henry-keen • 0

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702

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edgeR MethylationArray

updated 7 weeks ago by Gordon Smyth 50k • written 8 weeks ago by mico • 0

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552

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 12 months ago by belinda.phipson ▴ 40 • written 12 months ago by Grace • 0

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456

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edgeR MethylationArray

8 weeks ago mico • 0

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443

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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430

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minfi MethylationArray

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by sharangiiv • 0

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308

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edgeR MethylationArray

11 weeks ago mico • 0

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272

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MethylationArray methylationArrayAnalysis ChAMP

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by david.cheishvili • 0

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239

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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158

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

8 weeks ago BioinfoMug • 0

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139

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MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData

7 weeks ago • updated 5 weeks ago Giovanni Calice ▴ 160

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

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Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length