Showing : Methylumi • reset
0
votes
7
replies
2.2k
views
methyAnalysis error
GO convert methylumi genoset GO convert methylumi genoset
10.5 years ago Juan Fernández Tajes ▴ 190
0
votes
10
replies
2.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 190
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 180 • written 7.2 years ago by ▴ 10
1
vote
2
replies
1.5k
views
lumi package fails to load because of a missing dependency (bumphunter)
lumi methylumi
updated 5.5 years ago by ▴ 50 • written 5.5 years ago by ▴ 30
0
votes
5
replies
2.0k
views
Is it possible to convert Methylumi object into RGChannelSet
microarray minfi methylumi illumina450k
7.5 years ago • updated 6.6 years ago poojitha.stemcell ▴ 10
1
vote
1
reply
1.2k
views
Filtering by bead count
methylumi
updated 8.2 years ago by ★ 6.5k • written 8.2 years ago by ▴ 400
0
votes
2
replies
1.4k
views
Error while using BMIQ normalisation on a methylumiSet
limma watermelon methylumi bmiq
updated 7.4 years ago by ▴ 10 • written 7.4 years ago by ▴ 10
0
votes
2
replies
2.9k
views
convert between MethylLumiSet (methylumi) and RGChannelSet (minfi)
methylumi minfi methylumi minfi
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 170
0
votes
3
replies
1.7k
views
Data from GEO in Methylumi
methylumi methylumi
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 90
1
vote
1
reply
962
views
Subsetting samples and columns of a MethyLumiSet subsets QC probes
methylumi
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 160
0
votes
1
reply
1.2k
views
qcplot() error in methylumi?
methylumi methylumi
updated 12.1 years ago by ★ 4.2k • written 12.1 years ago by ▴ 10
1
vote
1
reply
728
views
Valid to normalise MethylumiSet using minfi?
normalization minfi methylumi
updated 5.2 years ago by 65k • written 5.2 years ago by • 0
0
votes
1
reply
1.1k
views
Illumina GoldenGate methylation array, methylumi
limma methylumi limma methylumi
updated 13.7 years ago by ▴ 350 • written 13.8 years ago by ▴ 10
0
votes
2
replies
1.1k
views
memory problem
Normalization lumi methylumi Normalization lumi methylumi
updated 12.9 years ago by ▴ 620 • written 12.9 years ago by 21k
0
votes
2
replies
1.2k
views
methylumi
Microarray methylumi Microarray methylumi
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 70
0
votes
1
reply
1.3k
views
Question on Analyzing Illumina 450k methylation data
methylumi methylumi
11.2 years ago Srinivas Srikanth ▴ 70
0
votes
3
replies
1.5k
views
'parallel' vs 'multicore'
methylumi methylumi
updated 12.6 years ago by 25k • written 12.6 years ago by ★ 4.2k
0
votes
1
reply
1.4k
views
problem with 'FDb.InfiniumMethylation.hg19'
BSgenome BSgenome lumi methylumi BSgenome BSgenome lumi methylumi
updated 10.9 years ago by ▴ 120 • written 10.9 years ago by 65k
0
votes
2
replies
1.3k
views
Cy5: methylated or unmethylated?
methylumi methylumi
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 720
0
votes
2
replies
2.3k
views
Disparity between MethylLumiSet (methylumi) and RGChannelSet (minfi) - treatment of missing values
probe methylumi probe methylumi
updated 10.8 years ago by ★ 6.5k • written 10.8 years ago by ▴ 20
0
votes
1
reply
1.2k
views
minfi
methylumi minfi methylumi minfi
updated 12.4 years ago by ★ 6.8k • written 12.4 years ago by ▴ 400
0
votes
6
replies
3.9k
views
Removing sex-chromosome probes from methyLumiSet
methylumi eSet illuminahumanmethylation450k.db featureFilter
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
4
votes
10
replies
4.4k
views
Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
1
vote
1
reply
621
views
Problems installing methylumi package
methylumi
updated 17 months ago by ★ 6.5k • written 17 months ago by • 0
0
votes
0
replies
1.1k
views
methylumiSet - normalization
methylumi methylumi
13.9 years ago Noemi Andor ▴ 100
0
votes
0
replies
834
views
methylumi: Quality Control
limma methylumi limma methylumi
13.8 years ago Jinyan Huang ▴ 50
0
votes
0
replies
981
views
about normalizeMethyLumiSet
methylumi methylumi
13.7 years ago gregory voisin ▴ 430
0
votes
0
replies
973
views
Results of QC of Demodata included in the package, HumMeth27QCReport
Normalization lumi methylumi Normalization lumi methylumi
13.5 years ago Francesco Mancuso ▴ 40
0
votes
0
replies
1.8k
views
reading with lumi
Preprocessing PROcess lumi methylumi Preprocessing PROcess lumi methylumi
12.2 years ago Tim Triche ★ 4.2k
0
votes
0
replies
1.1k
views
Error in doing QC for 450K IlluminaHumanMeth data using methylumi
methylumi methylumi
12.5 years ago Shruti Rastogi ▴ 10
0
votes
0
replies
1.0k
views
methylumi on Infiniium27k idat files
methylumi methylumi
12.0 years ago Briggs, Chris ▴ 20
0
votes
0
replies
984
views
Bioconductor Digest, Vol 110, Issue 11
Normalization Cancer lumi methylumi Normalization Cancer lumi methylumi
12.1 years ago Pan Du ▴ 440
0
votes
0
replies
1.0k
views
Large datasets in methylumi
methylumi methylumi
11.4 years ago Guest User ★ 13k
0
votes
0
replies
946
views
[methylumi] concerning methylumi.bgcorr function and out-of-band intensities
methylumi methylumi
11.3 years ago Dylan Aïssi ▴ 30
0
votes
0
replies
1.9k
views
how to use MethyLumiM object in BMIQ(wateRmelon)
lumi methylumi lumi methylumi
11.1 years ago Guest User ★ 13k
0
votes
0
replies
859
views
[methylumi] concerning methylumi.bgcorr function and out-of-band intensities
methylumi methylumi
11.1 years ago Hannah Elliott ▴ 10
0
votes
0
replies
979
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi convert lumi methylumi
10.5 years ago Allegra Petti ▴ 120
0
votes
0
replies
1.3k
views
how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.1 years ago rahel14350 ▴ 10
0
votes
0
replies
1.3k
views
Can't get the lumi and methylumi packages to work.
lumi methylumi
7.0 years ago gitteba • 0
2
votes
4
replies
2.7k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
0
votes
0
replies
704
views
Error when trying to read in idat files in methylumi
methylumi 450k methylation methylome
4.3 years ago A ▴ 40
0
votes
2
replies
1.0k
views
Convert MethyLumiSet into RGChannelSet (Illumina EPIC methylation data)
methylumi minfi microarray epic
4.1 years ago • updated 3.5 years ago Nala • 0
0
votes
1
reply
1.5k
views
MethylSet to MethyLumiSet
minfi methylumi watermelon
7.3 years ago • updated 7.2 years ago Tom ▴ 10
43 results • Page 1 of 1
Recent ...
Replies
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset) by Caio • 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by gene_bioconductor ▴ 10
Thanks for your thoughtful and detailed comment, Gordon
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I looked into the genomic distributions. Please see the screenshot attatched ![ distrubution for female loci, boot1 and boot2][1] how do …
Votes
Answer: Method to find pathways different between 2 groups
Answer: Method to find pathways different between 2 groups
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Awards • All
Popular Question to priyanka.m • 0
Popular Question to Vincent J. Carey, Jr. 6.7k
Scholar to ATpoint ★ 4.1k
Popular Question to Ben ▴ 50
Popular Question to Sam ▴ 10
Locations • All
United States, 1 minute ago
India, 2 minutes ago
United States, 3 minutes ago
United States, 5 minutes ago
Brazil, 9 minutes ago
Traffic: 793 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6