Bioconductor Mfuzz

Showing : Mfuzz • reset

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202

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Mfuzz

updated 4 months ago by James W. MacDonald 68k • written 4 months ago by xiao • 0

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1.9k

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Mfuzz RNASeq

21 months ago • updated 12 weeks ago boczniak767 ▴ 740

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739

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Mfuzz MacBook loadingissues

2.1 years ago Jon • 0

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1.5k

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Mfuzz loadingissues macbook

2.1 years ago Jon • 0

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1.3k

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time-series mfuzz replace=FALSE

3.6 years ago soda ▴ 80

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953

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Mfuzz

updated 5.1 years ago by James W. MacDonald 68k • written 5.1 years ago by syed.imtiazaziz • 0

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1.0k

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mfuzz normalization

6.4 years ago xizhang • 0

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3.5k

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deseq2 rnaseq mfuzz

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by rbenel ▴ 50

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1.5k

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mfuzz fold change log2 STANDARDISATION

7.5 years ago prakashpandey1111 • 0

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978

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mfuzz

7.5 years ago prakashpandey1111 • 0

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1.8k

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deseq2 mfuzz differential expression timecourse

updated 9.2 years ago by Michael Love 43k • written 9.2 years ago by Assa Yeroslaviz ★ 1.5k

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2.7k

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cluster mfuzz gene names

updated 9.7 years ago by Assa Yeroslaviz ★ 1.5k • written 9.7 years ago by thomas.dobrenel • 0

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5.9k

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mfuzz clustering bioinformatics proteomics timecourse

updated 9.8 years ago by Laurent Gatto 1.6k • written 9.8 years ago by under-waterworld • 0

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Mfuzz

9.9 years ago musically.ut • 0

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1.9k

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Clustering Mfuzz Clustering Mfuzz

11.6 years ago Assa Yeroslaviz ★ 1.5k

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1.4k

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Clustering Mfuzz Clustering Mfuzz

14.7 years ago boczniak767 ▴ 740

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4.9k

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Mfuzz Mfuzz

updated 19 months ago by Caio • 0 • written 14.7 years ago by boczniak767 ▴ 740

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2.0k

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Mfuzz Mfuzz

updated 16.6 years ago by James W. MacDonald 68k • written 16.6 years ago by dorothyc ▴ 140

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1.8k

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Clustering Mfuzz Clustering Mfuzz

updated 16.7 years ago by James W. MacDonald 68k • written 16.7 years ago by dorothyc ▴ 140

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6.9k

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Clustering Mfuzz Clustering Mfuzz

updated 16.8 years ago by Steve Pederson ▴ 60 • written 16.8 years ago by gregory voisin ▴ 430

20 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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