Bioconductor Mfuzz

Showing : Mfuzz • reset

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Mfuzz RNASeq

3 months ago boczniak767 ▴ 740

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392

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Mfuzz MacBook loadingissues

7 months ago Jon • 0

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753

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Mfuzz loadingissues macbook

7 months ago Jon • 0

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824

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time-series mfuzz replace=FALSE

2.1 years ago soda ▴ 80

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Mfuzz

updated 3.6 years ago by James W. MacDonald 66k • written 3.6 years ago by syed.imtiazaziz • 0

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643

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mfuzz normalization

5.0 years ago xizhang • 0

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2.6k

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deseq2 rnaseq mfuzz

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by rbenel ▴ 40

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mfuzz fold change log2 STANDARDISATION

6.0 years ago prakashpandey1111 • 0

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668

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mfuzz

6.0 years ago prakashpandey1111 • 0

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1.3k

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deseq2 mfuzz differential expression timecourse

updated 7.7 years ago by Michael Love 42k • written 7.7 years ago by Assa Yeroslaviz ★ 1.5k

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2.0k

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cluster mfuzz gene names

updated 8.2 years ago by Assa Yeroslaviz ★ 1.5k • written 8.2 years ago by thomas.dobrenel • 0

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mfuzz clustering bioinformatics proteomics timecourse

updated 8.3 years ago by Laurent Gatto 1.6k • written 8.3 years ago by under-waterworld • 0

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Mfuzz

8.4 years ago musically.ut • 0

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Clustering Mfuzz Clustering Mfuzz

10.1 years ago Assa Yeroslaviz ★ 1.5k

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Clustering Mfuzz Clustering Mfuzz

13.2 years ago boczniak767 ▴ 740

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3.8k

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Mfuzz Mfuzz

updated 5 weeks ago by Caio • 0 • written 13.2 years ago by boczniak767 ▴ 740

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Mfuzz Mfuzz

updated 15.2 years ago by James W. MacDonald 66k • written 15.2 years ago by dorothyc ▴ 140

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1.3k

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Clustering Mfuzz Clustering Mfuzz

updated 15.2 years ago by James W. MacDonald 66k • written 15.2 years ago by dorothyc ▴ 140

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6.1k

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Clustering Mfuzz Clustering Mfuzz

updated 15.3 years ago by Steve Pederson ▴ 60 • written 15.3 years ago by gregory voisin ▴ 430

19 results • Page 1 of 1

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Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100

Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz

Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k

The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …

Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k

You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.

Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0

In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…

Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k

For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…

Votes

Comment: Most enriched pathway is not expressed when modifying universe parameter

Time-course, comparison of two groups

Answer: Behaviour of featureCounts when quantifying multi-mapping reads

Answer: GESA with certain gene list returns no result with human genom, but many result

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

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