Showing : NA • reset
2
votes
1
reply
2.8k
views
Removing metadata rows containing NA values in GRanges
IRanges GRanges NA
updated 3.0 years ago by ★ 5.0k • written 3.0 years ago by • 0
0
votes
1
reply
1.9k
views
values (NA) in p value Deseq2 (reopen)
pvalue NA R DESeq2
updated 3.9 years ago by ★ 5.0k • written 3.9 years ago by • 0
0
votes
1
reply
1.2k
views
using qCount from the QuasR package
qCount QuasR NA
updated 5.2 years ago by ▴ 350 • written 5.2 years ago by • 0
2
votes
5
replies
5.1k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma mass spec na
updated 6.6 years ago by 53k • written 6.6 years ago by • 0
0
votes
2
replies
1.8k
views
normalizecoverage in methylkit outputs NAs
methylkit normalizecoverage NA
updated 7.0 years ago by ▴ 20 • written 7.0 years ago by ▴ 20
0
votes
8
replies
4.8k
views
DESeq2: handling NA values in colData
deseq2 coldata NA
updated 14 months ago by 43k • written 7.2 years ago by ▴ 170
0
votes
1
reply
2.7k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 7.6 years ago by 53k • written 7.6 years ago by • 0
0
votes
0
replies
1.0k
views
Inconsistent Missing Values When Importing GFF3
rtracklayer NA
9.1 years ago Dario Strbenac ★ 1.6k
2
votes
4
replies
1.6k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 9.3 years ago by 43k • written 9.3 years ago by ▴ 10
0
votes
3
replies
5.0k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2 NA cooksCutoff
updated 9.6 years ago by 43k • written 9.6 years ago by ▴ 30
2
votes
1
reply
2.1k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools lrr baf NA
updated 9.9 years ago by ▴ 890 • written 9.9 years ago by ▴ 40
1
vote
3
replies
1.8k
views
NAs values when importing BED file using import function
rtracklayer NA BED getseq
9.9 years ago Dimitris Polychronopoulos ▴ 80
0
votes
1
reply
1.9k
views
Plotting confidence intervals with NA values
graphics confidence interval NA
updated 10.0 years ago by 68k • written 10.0 years ago by ▴ 40
2
votes
2
replies
2.3k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 10.2 years ago by 68k • written 10.2 years ago by ▴ 40
0
votes
0
replies
1.8k
views
missing values in data as input for parody package
parody r NA
10.6 years ago upendrakumar.devisetty • 0
1
vote
2
replies
2.3k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
10.7 years ago remi.tournebize ▴ 10
3
votes
6
replies
2.6k
views
Possible bug in DEseq2 1.6.1 ?
deseq2 cook NA
updated 11.0 years ago by 43k • written 11.0 years ago by ▴ 10
12
votes
13
replies
9.2k
views
EdgeR Differential Expression analysis with NAs
EdgeR rnaseq NA
updated 11.1 years ago by ★ 29k • written 11.1 years ago by • 0
18 results • Page 1 of 1
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Replies
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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