Showing : NA • reset
12
votes
13
replies
7.7k
views
EdgeR Differential Expression analysis with NAs
EdgeR rnaseq NA
updated 9.6 years ago by ★ 28k • written 9.6 years ago by • 0
1
vote
2
replies
1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer NA BED getseq
8.4 years ago Dimitris Polychronopoulos ▴ 80
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 40
0
votes
1
reply
1.5k
views
Plotting confidence intervals with NA values
graphics confidence interval NA
updated 8.6 years ago by 65k • written 8.6 years ago by ▴ 40
2
votes
1
reply
1.7k
views
Meaning of NA for LRR and BAF values estimated with GWASTools
gwastools lrr baf NA
updated 8.4 years ago by ▴ 870 • written 8.4 years ago by ▴ 40
0
votes
3
replies
4.6k
views
DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2 NA cooksCutoff
updated 8.1 years ago by 41k • written 8.1 years ago by ▴ 30
0
votes
1
reply
1.2k
views
values (NA) in p value Deseq2 (reopen)
pvalue NA R DESeq2
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by • 0
2
votes
4
replies
1.2k
views
ResrtingTools include pvalue NA
reportingtools deseq2 NA pvalue
updated 7.8 years ago by 41k • written 7.8 years ago by ▴ 10
3
votes
6
replies
2.3k
views
Possible bug in DEseq2 1.6.1 ?
deseq2 cook NA
updated 9.5 years ago by 41k • written 9.5 years ago by ▴ 10
0
votes
1
reply
769
views
using qCount from the QuasR package
qCount QuasR NA
updated 3.8 years ago by ▴ 350 • written 3.8 years ago by • 0
2
votes
1
reply
1.8k
views
Removing metadata rows containing NA values in GRanges
IRanges GRanges NA
updated 19 months ago by ★ 4.1k • written 19 months ago by • 0
0
votes
1
reply
2.2k
views
DGEList remove/exclude rows with entrezgene = 'NA'
edger dgelist NA egsea
updated 6.2 years ago by 50k • written 6.2 years ago by • 0
0
votes
6
replies
3.5k
views
DESeq2: handling NA values in colData
deseq2 coldata NA
updated 5.7 years ago by 41k • written 5.7 years ago by ▴ 170
0
votes
2
replies
1.2k
views
normalizecoverage in methylkit outputs NAs
methylkit normalizecoverage NA
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by ▴ 20
2
votes
5
replies
3.7k
views
Dealing with NA values from mass spec data using Limma, NA values.
limma mass spec na
updated 5.2 years ago by 50k • written 5.2 years ago by • 0
0
votes
0
replies
777
views
Inconsistent Missing Values When Importing GFF3
rtracklayer NA
7.6 years ago Dario Strbenac ★ 1.5k
0
votes
0
replies
1.6k
views
missing values in data as input for parody package
parody r NA
9.1 years ago upendrakumar.devisetty • 0
18 results • Page 1 of 1
Recent ...
Replies
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Awards • All
Popular Question to junhui.li11 • 0
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
Centurion to Chris • 0
Commentator to Leonard Goldstein ▴ 200
Locations • All
WEHI, Melbourne, Australia, just now
United States, 22 minutes ago
United States, 24 minutes ago
Switzerland, 58 minutes ago
United States, 1 hour ago
Traffic: 505 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6