Bioconductor NMF

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4.2k

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NMF Biobase

updated 2.6 years ago by shepherl 4.1k • written 2.6 years ago by Abhishek • 0

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2.0k

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NMF scater

4.2 years ago lirongrossmann ▴ 50

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532

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NMF ZeiselBrainData

4.5 years ago sofia.puvogel • 0

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1.7k

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MutationalPatterns NMF

5.6 years ago TRASA • 0

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3.5k

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somaticsignatures NMF

updated 6.1 years ago by Xin • 0 • written 6.5 years ago by aslam.mohammed398 • 0

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939

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NMF log2 classification bioconductor

6.5 years ago Seymoo • 0

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1.2k

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NMF somaticsignatures R 3.4.3

updated 6.8 years ago by shepherl 4.1k • written 6.8 years ago by samuel.fux • 0

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3.4k

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somaticsignatures NMF

updated 7.2 years ago by grimmmmer • 0 • written 7.9 years ago by ns • 0

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2.7k

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deseq2 combat outliers NMF

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by noname • 0

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1.3k

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NMF minfi

8.8 years ago yura.grabovska ▴ 30

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1.3k

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affy coefmap nmf

updated 9.0 years ago by James W. MacDonald 67k • written 9.0 years ago by thrabe • 0

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1.8k

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sva somaticsignatures batch effect nmf

updated 9.1 years ago by Jeff Leek ▴ 650 • written 9.1 years ago by kw10 • 0

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1.7k

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NMF bioconductor R

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Deepak Tanwar ▴ 10

13 results • Page 1 of 1

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Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k

R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…

Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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