Bioconductor NMF

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3.9k

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NMF Biobase

updated 2.4 years ago by shepherl 4.1k • written 2.5 years ago by Abhishek • 0

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2.0k

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NMF scater

4.1 years ago lirongrossmann ▴ 50

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512

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NMF ZeiselBrainData

4.3 years ago sofia.puvogel • 0

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1.6k

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MutationalPatterns NMF

5.5 years ago TRASA • 0

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3.4k

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somaticsignatures NMF

updated 6.0 years ago by Xin • 0 • written 6.3 years ago by aslam.mohammed398 • 0

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915

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NMF log2 classification bioconductor

6.4 years ago Seymoo • 0

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1.2k

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NMF somaticsignatures R 3.4.3

updated 6.7 years ago by shepherl 4.1k • written 6.7 years ago by samuel.fux • 0

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3.3k

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somaticsignatures NMF

updated 7.1 years ago by grimmmmer • 0 • written 7.7 years ago by ns • 0

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2.6k

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deseq2 combat outliers NMF

updated 7.4 years ago by Michael Love 42k • written 7.4 years ago by noname • 0

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1.3k

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NMF minfi

8.7 years ago yura.grabovska ▴ 30

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1.3k

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affy coefmap nmf

updated 8.8 years ago by James W. MacDonald 67k • written 8.8 years ago by thrabe • 0

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1.8k

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sva somaticsignatures batch effect nmf

updated 8.9 years ago by Jeff Leek ▴ 650 • written 8.9 years ago by kw10 • 0

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1.6k

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NMF bioconductor R

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by Deepak Tanwar ▴ 10

13 results • Page 1 of 1

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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