Bioconductor NMF

Showing : NMF • reset

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5.4k

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NMF Biobase

updated 3.5 years ago by shepherl 4.2k • written 3.6 years ago by Abhishek • 0

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2.4k

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NMF scater

5.2 years ago lirongrossmann ▴ 50

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689

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NMF ZeiselBrainData

5.4 years ago sofia.puvogel • 0

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2.0k

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MutationalPatterns NMF

6.6 years ago TRASA • 0

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4.1k

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somaticsignatures NMF

updated 7.1 years ago by Xin • 0 • written 7.4 years ago by aslam.mohammed398 • 0

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1.1k

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NMF log2 classification bioconductor

7.5 years ago Seymoo • 0

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1.5k

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NMF somaticsignatures R 3.4.3

updated 7.8 years ago by shepherl 4.2k • written 7.8 years ago by samuel.fux • 0

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3.9k

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somaticsignatures NMF

updated 8.2 years ago by grimmmmer • 0 • written 8.8 years ago by ns • 0

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3.1k

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deseq2 combat outliers NMF

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by noname • 0

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1.5k

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NMF minfi

9.8 years ago yura.grabovska ▴ 30

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1.5k

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affy coefmap nmf

updated 9.9 years ago by James W. MacDonald 68k • written 9.9 years ago by thrabe • 0

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2.1k

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sva somaticsignatures batch effect nmf

updated 10.0 years ago by Jeff Leek ▴ 650 • written 10.0 years ago by kw10 • 0

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1.9k

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NMF bioconductor R

updated 10.4 years ago by Martin Morgan 25k • written 10.4 years ago by Deepak Tanwar ▴ 10

13 results • Page 1 of 1

Recent ...

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Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Commentator to sina.nassiri ▴ 130