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NMF
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0
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1
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5.3k
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NMF installation with current R version
NMF
Biobase
updated 3.4 years ago by
shepherl
4.2k • written 3.4 years ago by
Abhishek
• 0
5
votes
5
replies
2.4k
views
Running NMF for single cell
NMF
scater
5.0 years ago
lirongrossmann
▴ 50
0
votes
0
replies
656
views
NMF in single cell analysis
NMF
ZeiselBrainData
5.3 years ago
sofia.puvogel
• 0
0
votes
0
replies
1.9k
views
Error in NMF estimation
MutationalPatterns
NMF
6.4 years ago
TRASA
• 0
0
votes
7
replies
4.0k
views
nmf function not working
somaticsignatures
NMF
updated 7.0 years ago by
Xin
• 0 • written 7.3 years ago by
aslam.mohammed398
• 0
0
votes
0
replies
1.1k
views
NMF pre-processsing effect on classification
NMF
log2
classification
bioconductor
7.4 years ago
Seymoo
• 0
0
votes
1
reply
1.4k
views
SomaticSignatures for Bioconductor 3.6 (R 3.4.3) depends on NMF, which is not available for R 3.4.3
NMF
somaticsignatures
R 3.4.3
updated 7.6 years ago by
shepherl
4.2k • written 7.6 years ago by
samuel.fux
• 0
0
votes
6
replies
3.8k
views
Somaticsignature NMF problem
somaticsignatures
NMF
updated 8.0 years ago by
grimmmmer
• 0 • written 8.7 years ago by
ns
• 0
0
votes
4
replies
3.0k
views
DESeq2, outlier correction, Combat, NMF
deseq2
combat
outliers
NMF
updated 8.4 years ago by
Michael Love
43k • written 8.4 years ago by
noname
• 0
0
votes
0
replies
1.4k
views
Defining metagenes from NMF in methylation array data - next step?
NMF
minfi
9.6 years ago
yura.grabovska
▴ 30
0
votes
2
replies
1.5k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 9.8 years ago by
James W. MacDonald
68k • written 9.8 years ago by
thrabe
• 0
0
votes
1
reply
2.1k
views
SomaticSignatures: negative entries after ComBat adjustment
sva
somaticsignatures
batch effect
nmf
updated 9.9 years ago by
Jeff Leek
▴ 650 • written 9.9 years ago by
kw10
• 0
0
votes
1
reply
1.9k
views
NMF Package error
NMF
bioconductor
R
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
Deepak Tanwar
▴ 10
13 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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