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NOISeq
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1.2k
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 2.3 years ago by
ATpoint
★ 5.0k • written 2.3 years ago by
Rutuja
• 0
1
vote
1
reply
1.2k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
3.5 years ago
Pratibha
▴ 10
0
votes
2
replies
1.3k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.9 years ago by
ATpoint
★ 5.0k • written 5.0 years ago by
Themis
• 0
3
votes
6
replies
2.7k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.9 years ago by
Michael Love
43k • written 5.2 years ago by
andreia
▴ 10
0
votes
1
reply
1.2k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 18 months ago by
baptiste.bidon
• 0 • written 6.3 years ago by
Arindam
▴ 80
0
votes
0
replies
979
views
NOISeq 'readData' not writing correctly
software error
NOISeq
6.4 years ago
jledmondson
• 0
0
votes
1
reply
1.3k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.5 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.6 years ago
Aurora
▴ 20
0
votes
0
replies
1.3k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.8 years ago
aokoro
• 0
0
votes
0
replies
2.1k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
8.2 years ago
Luiz
• 0
0
votes
3
replies
2.0k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 8.3 years ago by
James W. MacDonald
68k • written 8.3 years ago by
Mau
▴ 50
0
votes
5
replies
4.8k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 8.6 years ago by
Michael Love
43k • written 8.6 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.6k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
10.1 years ago
lina.faller
▴ 10
0
votes
0
replies
1.3k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.8 years ago
Guest User
★ 13k
0
votes
2
replies
3.2k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 13.2 years ago by
Dan Tenenbaum
★ 8.2k • written 13.2 years ago by
Guest User
★ 13k
0
votes
4
replies
2.5k
views
NOISeq installation error
NOISeq
NOISeq
updated 13.2 years ago by
Sean Davis
21k • written 13.2 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.4k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.7 years ago
Guest User
★ 13k
17 results • Page
1 of 1
Recent ...
Replies
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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