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NOISeq
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1.2k
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Inquiring about Comparative Analysis without Replicates in NOIseq R Package
NOISeq
withoutreplicate
Noiseq
updated 2.2 years ago by
ATpoint
★ 5.0k • written 2.2 years ago by
Rutuja
• 0
1
vote
1
reply
1.1k
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
3.4 years ago • updated 3.3 years ago
Pratibha
▴ 10
0
votes
2
replies
1.3k
views
Differential expression on RNAseq without replicates
DESeq2
NOISeq
edgeR
updated 4.8 years ago by
ATpoint
★ 5.0k • written 4.8 years ago by
Themis
• 0
3
votes
6
replies
2.6k
views
deseq2 + filtering low counts with noiseq function
deseq2
noiseq
lowcounts
rnaseq
updated 3.8 years ago by
Michael Love
43k • written 5.1 years ago by
andreia
▴ 10
0
votes
1
reply
1.2k
views
How to arrange multiple plots into one page in NOISeq?
noiseq
RNA-seq
quality control
updated 17 months ago by
baptiste.bidon
• 0 • written 6.2 years ago by
Arindam
▴ 80
0
votes
0
replies
944
views
NOISeq 'readData' not writing correctly
software error
NOISeq
6.3 years ago
jledmondson
• 0
0
votes
1
reply
1.2k
views
Is possible to use NOISeq with counts from RSubread?
noiseq
rsubread
tophat
bowtie
bowtie2
6.4 years ago
Marcelo Laia
▴ 450
0
votes
0
replies
1.4k
views
Noiseqbio function (NOISEQ package)
noiseq
logfoldchange
7.5 years ago
Aurora
▴ 20
0
votes
0
replies
1.3k
views
NOISeq: Need help with my data frame
R
noiseq
data.frame
7.7 years ago
aokoro
• 0
0
votes
0
replies
2.1k
views
Problem with heatmap by ComplexHeatmap
complexheatmap
Rstudio
NOISeq
8.1 years ago
Luiz
• 0
0
votes
3
replies
1.9k
views
Is the CPM filtering method from NOISeq unsupervised?
rnaseq
de analysis
gene filtering
noiseq
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
Mau
▴ 50
0
votes
5
replies
4.7k
views
GC content and length bias correction with DESeq2 using cqn normalization factor matrix
deseq2
cqn
noiseq
updated 8.5 years ago by
Michael Love
43k • written 8.5 years ago by
glmazzo
▴ 10
0
votes
0
replies
1.5k
views
NOISeq error message while using ARSyNseq batch correction function
noiseq
batch effect
ARSyNseq
10.0 years ago
lina.faller
▴ 10
0
votes
0
replies
1.3k
views
Question: type of NOISeq package input file
RNASeq
NOISeq
RNASeq
NOISeq
12.6 years ago
Guest User
★ 13k
0
votes
2
replies
3.2k
views
NOISeq initialization problem
NOISeq
NOISeq
updated 13.0 years ago by
Dan Tenenbaum
★ 8.2k • written 13.0 years ago by
Guest User
★ 13k
0
votes
4
replies
2.4k
views
NOISeq installation error
NOISeq
NOISeq
updated 13.0 years ago by
Sean Davis
21k • written 13.0 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.4k
views
NOISeq-real input parameters
NOISeq
NOISeq
13.6 years ago
Guest User
★ 13k
17 results • Page
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Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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