Bioconductor NOISeq

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1.3k

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NOISeq withoutreplicate Noiseq

updated 2.5 years ago by ATpoint ★ 5.0k • written 2.5 years ago by Rutuja • 0

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1.2k

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RNAseq RNASeqData NOISeq

3.6 years ago Pratibha ▴ 10

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1.4k

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DESeq2 NOISeq edgeR

updated 5.1 years ago by ATpoint ★ 5.0k • written 5.1 years ago by Themis • 0

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2.8k

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deseq2 noiseq lowcounts rnaseq

updated 4.0 years ago by Michael Love 43k • written 5.4 years ago by andreia ▴ 10

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1.3k

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noiseq RNA-seq quality control

updated 20 months ago by baptiste.bidon • 0 • written 6.4 years ago by Arindam ▴ 80

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1.0k

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software error NOISeq

6.6 years ago jledmondson • 0

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1.3k

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noiseq rsubread tophat bowtie bowtie2

6.6 years ago Marcelo Laia ▴ 450

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1.4k

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noiseq logfoldchange

7.8 years ago Aurora ▴ 20

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1.4k

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R noiseq data.frame

8.0 years ago aokoro • 0

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2.2k

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complexheatmap Rstudio NOISeq

8.4 years ago Luiz • 0

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2.0k

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rnaseq de analysis gene filtering noiseq

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by Mau ▴ 50

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4.8k

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deseq2 cqn noiseq

updated 8.7 years ago by Michael Love 43k • written 8.7 years ago by glmazzo ▴ 10

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1.6k

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noiseq batch effect ARSyNseq

10.2 years ago lina.faller ▴ 10

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1.4k

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RNASeq NOISeq RNASeq NOISeq

12.9 years ago Guest User ★ 13k

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3.3k

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NOISeq NOISeq

updated 13.3 years ago by Dan Tenenbaum ★ 8.2k • written 13.3 years ago by Guest User ★ 13k

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2.5k

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NOISeq NOISeq

updated 13.3 years ago by Sean Davis 21k • written 13.3 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.4k

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NOISeq NOISeq

13.9 years ago Guest User ★ 13k

17 results • Page 1 of 1

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

Votes

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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