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PCATools
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0
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replies
59
views
Problem with PCAtool as dependencie
COTAN
PCAtools
4 weeks ago
Silvia
• 0
1
vote
2
replies
764
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
9 months ago
BioinfGuru
▴ 70
0
votes
2
replies
505
views
PCA plot suggestions
DESeq2
PCAtools
updated 10 months ago by
Michael Love
43k • written 10 months ago by
Aaliya
• 0
0
votes
7
replies
1.8k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 10 months ago by
swbarnes2
★ 1.4k • written 10 months ago by
Aaliya
• 0
3
votes
6
replies
1.6k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 10 months ago by
Fabian
• 0
4
votes
8
replies
5.1k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 22 months ago by
CP
• 0 • written 3.7 years ago by
elizabethe819
• 0
1
vote
3
replies
1.6k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 2.1 years ago by
Kevin Blighe
★ 4.0k • written 2.1 years ago by
M Tuhin
• 0
1
vote
1
reply
1.5k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.3 years ago by
Kevin Blighe
★ 4.0k • written 2.3 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.1k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 2.6 years ago by
James W. MacDonald
68k • written 2.6 years ago by
pterry
• 0
0
votes
3
replies
1.8k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 2.7 years ago by
Federico Marini
▴ 180 • written 2.7 years ago by
m610110001
• 0
5
votes
6
replies
3.5k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.8 years ago
Alan
• 0
3
votes
2
replies
1.2k
views
PCAtools lables missing or out of the plot
PCAtools
3.9 years ago
luca.s
▴ 50
3
votes
3
replies
3.5k
views
PCAtools - change colour of points
PCAtools
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
Terra
• 0
3
votes
15
replies
3.9k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.2k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
ecg1g15
▴ 30
1
vote
3
replies
1.8k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.1k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 3.2 years ago by
Miguel
▴ 20 • written 4.5 years ago by
k.vitting.seerup
▴ 120
17 results • Page
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Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Comment: batch effect removal for agilent microarray data
by
gaye.yilmaz
• 0
Hello again, Can using inSilicoMerging handle this situation?
Answer: normalizatino of dna methylation EPIC data
by
James W. MacDonald
68k
Your code doesn't show the error? Anyway, the default for `colMeans2` is useNames = TRUE, and the call to `colMeans2` in `preprocessNoob…
Answer: WGCNA
by
James W. MacDonald
68k
This support site is meant to help people with technical questions about using Bioconductor packages, rather than as a place to get analysi…
Answer: EuroBioC2023 abstract submission is open!
by
cirwin009
• 0
Submit here https://openreview.net/group?id=bioconductor.org/EuroBioC/2023/ [Block Blast][1] This article offers a thorough and in-depth…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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