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PCATools
•
reset
0
votes
0
replies
98
views
Problem with PCAtool as dependencie
COTAN
PCAtools
11 weeks ago
Silvia
• 0
1
vote
2
replies
889
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
11 months ago • updated 10 months ago
BioinfGuru
▴ 70
0
votes
2
replies
548
views
PCA plot suggestions
DESeq2
PCAtools
updated 11 months ago by
Michael Love
43k • written 11 months ago by
Aaliya
• 0
0
votes
7
replies
2.2k
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
updated 11 months ago by
swbarnes2
★ 1.4k • written 11 months ago by
Aaliya
• 0
3
votes
6
replies
1.8k
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
written 12 months ago by
Fabian
• 0
4
votes
8
replies
5.4k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 2.0 years ago by
CP
• 0 • written 3.9 years ago by
elizabethe819
• 0
1
vote
3
replies
1.8k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 2.2 years ago by
Kevin Blighe
★ 4.0k • written 2.2 years ago by
M Tuhin
• 0
1
vote
1
reply
1.6k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 2.4 years ago by
Kevin Blighe
★ 4.0k • written 2.4 years ago by
ilaria.debenedictis
• 0
0
votes
1
reply
1.1k
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 2.7 years ago by
James W. MacDonald
68k • written 2.7 years ago by
pterry
• 0
0
votes
3
replies
2.0k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 2.8 years ago by
Federico Marini
▴ 180 • written 2.8 years ago by
m610110001
• 0
5
votes
6
replies
3.8k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
3.0 years ago
Alan
• 0
3
votes
2
replies
1.2k
views
PCAtools lables missing or out of the plot
PCAtools
4.0 years ago
luca.s
▴ 50
3
votes
3
replies
3.6k
views
PCAtools - change colour of points
PCAtools
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
Terra
• 0
3
votes
15
replies
4.1k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 4.3 years ago by
Kevin Blighe
★ 4.0k • written 4.3 years ago by
mschmidt
▴ 10
0
votes
1
reply
2.3k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 4.4 years ago by
Kevin Blighe
★ 4.0k • written 4.4 years ago by
ecg1g15
▴ 30
1
vote
3
replies
1.9k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 4.5 years ago by
Kevin Blighe
★ 4.0k • written 4.5 years ago by
oakhamwolf
• 0
2
votes
4
replies
2.2k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 3.3 years ago by
Miguel
▴ 20 • written 4.6 years ago by
k.vitting.seerup
▴ 120
17 results • Page
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Comment: Differential expression analysis using two TCGA datasets
by
ATpoint
★ 4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar
by
ATpoint
★ 4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
Answer: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…
Answer: fast apply on RleList
by
story.benjamin
▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Votes
Answer: how to use `arrayWeightsQuick()`?
Answer: how to use `arrayWeightsQuick()`?
Having Trouble Using CNE12() and CNE21() in CNEr
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
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