Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.7 years ago zusman • 0

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1.5k

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QualityControl Alignment QuasR

updated 4.7 years ago by Michael Stadler ▴ 350 • written 4.7 years ago by h.kozlowski • 0

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877

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folder quality QualityControl AffyExpress

4.8 years ago bastien_chassagnol • 0

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1.9k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by n.lu • 0

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qualitycontrol

updated 8.6 years ago by Mike Smith ★ 6.6k • written 8.6 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.6 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

9.0 years ago Bouzid.a ▴ 20

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4.8k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.4 years ago by Stephanie M. Gogarten ▴ 890 • written 9.4 years ago by Lna • 0

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1.9k

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NUSE qualitycontrol microarray

updated 9.8 years ago by Diego Diez ▴ 760 • written 9.8 years ago by jacorvar ▴ 40

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3.1k

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rna-seq GC-Content qualitycontrol

updated 9.9 years ago by Matthew McCormack ▴ 180 • written 9.9 years ago by NS ▴ 60

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2.1k

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limma affy probe qualitycontrol design and contrast matrix

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

18.4 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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