Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.7 years ago zusman • 0

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1.5k

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QualityControl Alignment QuasR

updated 4.7 years ago by Michael Stadler ▴ 350 • written 4.7 years ago by h.kozlowski • 0

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896

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folder quality QualityControl AffyExpress

4.9 years ago bastien_chassagnol • 0

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2.0k

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 8.2 years ago by James W. MacDonald 68k • written 8.2 years ago by n.lu • 0

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1.2k

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qualitycontrol

updated 8.7 years ago by Mike Smith ★ 6.6k • written 8.7 years ago by XIA.PAN ▴ 20

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.7 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

9.0 years ago Bouzid.a ▴ 20

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4.9k

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 9.5 years ago by Stephanie M. Gogarten ▴ 890 • written 9.5 years ago by Lna • 0

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1.9k

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NUSE qualitycontrol microarray

updated 9.8 years ago by Diego Diez ▴ 760 • written 9.8 years ago by jacorvar ▴ 40

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3.1k

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rna-seq GC-Content qualitycontrol

updated 10.0 years ago by Matthew McCormack ▴ 180 • written 10.0 years ago by NS ▴ 60

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2.1k

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limma affy probe qualitycontrol design and contrast matrix

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by alakatos ▴ 130

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1.6k

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

18.5 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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