Bioconductor QualityControl

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QualityControl methylationArrayAnalysis

3.1 years ago zusman • 0

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1.4k

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QualityControl Alignment QuasR

updated 4.1 years ago by Michael Stadler ▴ 350 • written 4.1 years ago by h.kozlowski • 0

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786

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folder quality QualityControl AffyExpress

4.3 years ago bastien_chassagnol • 0

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qc qualitycontrol arrayqualitymetrics mouse gene st 2.0 affymetrix

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by n.lu • 0

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qualitycontrol

updated 8.1 years ago by Mike Smith ★ 6.6k • written 8.1 years ago by XIA.PAN ▴ 20

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1.2k

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shinymethyl minfi epic microarray methylationepic qualitycontrol

8.1 years ago chelsey.ju • 0

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limma one colour agilent microarrays qualitycontrol arrayqualitymetrics

8.4 years ago Bouzid.a ▴ 20

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GWASTools qualitycontrol HumanOmni5-4BeadChip GenomeStudio illumina

updated 8.9 years ago by Stephanie M. Gogarten ▴ 890 • written 8.9 years ago by Lna • 0

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1.7k

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NUSE qualitycontrol microarray

updated 9.2 years ago by Diego Diez ▴ 760 • written 9.2 years ago by jacorvar ▴ 40

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2.8k

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rna-seq GC-Content qualitycontrol

updated 9.4 years ago by Matthew McCormack ▴ 180 • written 9.4 years ago by NS ▴ 60

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limma affy probe qualitycontrol design and contrast matrix

updated 10.2 years ago by Gordon Smyth 52k • written 10.2 years ago by alakatos ▴ 130

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Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy

17.9 years ago Amin Moghaddasi ▴ 130

12 results • Page 1 of 1

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Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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