Showing : RNA-seq • reset
5
votes
2
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25k
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DESeq2: thousands of NA for pvalues?
deseq2 rna-seq DEGs cooks cutoff
written 5.9 years ago by ▴ 30
1
vote
6
replies
931
views
Volcano plot has many values around zero
RNA-seq DESeq2 volcanoplot
updated 4 weeks ago by 43k • written 4 weeks ago by ▴ 10
0
votes
2
replies
287
views
RNA-Seq p value range variation
DESeq2 pvalue RNA-Seq
9 weeks ago paul.meraner • 0
0
votes
0
replies
197
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
11 weeks ago Fernanda • 0
1
vote
3
replies
566
views
Including infectivity information to RNA-Seq analysis
RNASeqData DESeq2 RNA-Seq RNASeq
updated 6 months ago by 67k • written 6 months ago by ▴ 50
2
votes
4
replies
670
views
DESeq2- Mysterious interaction suppresses DEGs
DESeq2 PCAplot RNA-Seq DesignModel
updated 6 months ago by 43k • written 6 months ago by • 0
1
vote
2
replies
628
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
7 months ago Dylan.Sheerin • 0
2
votes
5
replies
980
views
Too many significant genes when integrating gtex and tcga
RNA-seq DESeq2
updated 5 months ago by ★ 4.6k • written 7 months ago by • 0
3
votes
3
replies
908
views
permutation test in edgeR
rna-seq edgeR
updated 7 months ago by 52k • written 8 months ago by • 0
0
votes
1
reply
1.1k
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 12 months ago by ★ 4.6k • written 6.7 years ago by • 0
0
votes
1
reply
931
views
How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
updated 6 months ago by • 0 • written 5.3 years ago by ▴ 80
9
votes
12
replies
8.6k
views
Multi factor design edgeR/Deseq2
deseq2 edgeR rna-seq
updated 7 months ago by • 0 • written 9.4 years ago by ▴ 30
12 results • Page 1 of 1
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Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0
The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …
Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0
Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…
Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k
I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…
Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k
The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…
Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k
No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…
Votes
Answer: Mapping Between GenBank ID's and Uniprot
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
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