Showing : RNA-seq • reset
1
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2.8k
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Pairwise comparison of multiple groups with different base
deseq2 rna-seq r
updated 22 days ago by • 0 • written 5.7 years ago by ▴ 10
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3
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1.6k
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
written 7.6 years ago by ▴ 10
3
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4
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8.5k
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Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
written 5.5 years ago by ▴ 80
1
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10
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11k
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DESeq2: Continuous and discreate variables in the design
deseq2 R rna-seq design
updated 6 months ago by 43k • written 6.2 years ago by • 0
0
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3
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2.2k
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Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
deseq2 random effects batch effects RNA-seq rna-seq
written 8.6 years ago by • 0
5
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3
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3.1k
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single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 10 months ago by ▴ 10 • written 8.1 years ago by ▴ 100
0
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2
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5.3k
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Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 5.6 years ago by ▴ 80
5
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3
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29k
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DESeq2: thousands of NA for pvalues?
deseq2 rna-seq DEGs cooks cutoff
written 7.1 years ago by ▴ 30
2
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6
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2.8k
views
Too many significant genes when integrating gtex and tcga
RNA-seq DESeq2
updated 11 months ago by • 0 • written 21 months ago by • 0
0
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1
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1.1k
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To count or not to count multi-overlapping reads?
RNA-Seq featureCounts Rsubread
updated 12 months ago by 53k • written 12 months ago by ▴ 80
10 results • Page 1 of 1
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Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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