Bioconductor RNA-seq

Showing : RNA-seq • reset

votes

replies

316

views

rna-seq edgeR

updated 11 days ago by Gordon Smyth 50k • written 24 days ago by Netanel • 0

votes

replies

7.8k

views

deseq2 edgeR rna-seq

updated 14 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

votes

906

views

correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.1k • written 6.0 years ago by saad_k6 • 0

votes

replies

311

views

RNA-Seq WGCNA Worms

5 months ago davca • 0

votes

replies

701

views

RNA-seq DESeq2

7 months ago • updated 6 months ago ar14g12 • 0

votes

replies

3.5k

views

RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

votes

replies

1.6k

views

GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

votes

replies

654

views

DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

votes

replies

2.3k

views

Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

votes

replies

862

views

BatchEffect lfcshrink RNA-seq DESeq2

8 months ago Eva ▴ 10

votes

replies

2.2k

views

isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

votes

replies

682

views

rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

votes

replies

1.2k

views

filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

votes

replies

1.2k

views

gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

votes

replies

848

views

RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

votes

replies

710

views

RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by FedeXander • 0

16 results • Page 1 of 1

Recent ...

Replies

Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

Answer: DESeq2 v1.35.0 by James W. MacDonald 65k

Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0

I tried also with oligo does not work, any other suggestion?

Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70

Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Awards • All

Popular Question to rohitsatyam102 ▴ 20