Bioconductor RNA-seq

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158

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RNA-seq DESeq2

updated 1 day ago by ATpoint ★ 4.1k • written 2 days ago by Reza • 0

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336

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rna-seq edgeR

updated 15 days ago by Gordon Smyth 50k • written 28 days ago by Netanel • 0

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909

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correlation pearsoncorrelation rna-seq differential gene expression

updated 4 months ago by ATpoint ★ 4.1k • written 6.0 years ago by saad_k6 • 0

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313

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RNA-Seq WGCNA Worms

5 months ago davca • 0

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712

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RNA-seq DESeq2

7 months ago • updated 6 months ago ar14g12 • 0

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3.5k

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RNA-seq featureCounts ht-seq

written 3.8 years ago by ag1805x ▴ 80

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1.6k

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GeneExpression GenomicFeatures RNA-Seq TPM

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by gingergeiger22 • 0

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659

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DEXSeq RNA-seq DESeq2

updated 8 months ago by Alejandro Reyes ★ 1.9k • written 8 months ago by Alice • 0

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874

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BatchEffect lfcshrink RNA-seq DESeq2

9 months ago Eva ▴ 10

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687

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rna-seq salmon fishpond swish

updated 10 months ago by Michael Love 41k • written 10 months ago by samuelcjx • 0

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1.2k

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filtering RNA-Seq CPM edgeR filterByExpr

updated 11 months ago by Gordon Smyth 50k • written 11 months ago by mohammedtoufiq91 ▴ 10

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713

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RNA-Seq normalization PCR_efficiency bias intrasample_comparison

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

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856

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RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 12 months ago by James W. MacDonald 65k • written 12 months ago by FedeXander • 0

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2.3k

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Spike-in RNASeqR DESeq2 Normalization rna-seq

updated 8 months ago by manuel.fernandez • 0 • written 2.1 years ago by cicely.day • 0

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1.2k

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gage rna-seq pathwayanalysis

updated 11 months ago by Rob • 0 • written 3.5 years ago by microPhD • 0

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2.2k

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isoformswitchanalyzeR rna-seq splice-variants

written 5.1 years ago by saddamhusain77 • 0

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7.8k

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deseq2 edgeR rna-seq

updated 17 days ago by Elizabeth • 0 • written 8.8 years ago by gthm ▴ 30

17 results • Page 1 of 1

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Comment: Couldn't connect to server while using "pathways" by ATpoint ★ 4.1k

Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…

Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k