Showing : RPKM • reset
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2.2k
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Tutorial: Read data file containing both counts and annotation into edgeR
rpkm edgeR featureCounts
2.3 years ago Gordon Smyth 53k
1
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4
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6.1k
views
Conversion from FPKM,RPKM to tpm
DESEQ2 fpkm rpkm tpm
4.3 years ago Sandhiya • 0
9
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10
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9.8k
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How to get gene length for RPKM directly from DGEList object in latest edgeR?
Normalization edgeR RPKM
updated 2.8 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
1
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5
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2.0k
views
bug in "dispersion" argument in edgeR - rpkmByGroup
edger rpkm
updated 6.5 years ago by • 0 • written 6.5 years ago by • 0
7
votes
3
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4.7k
views
Log2(RPKM) counts in Bioconductor
rpkm scater calcaverage R expression
updated 6.7 years ago by ★ 29k • written 6.7 years ago by ▴ 10
2
votes
1
reply
2.0k
views
Bioconductor with RPKM counts or Raw counts
singlecellexperiment rpkm normalization qc
updated 6.7 years ago by ★ 29k • written 6.7 years ago by ▴ 10
1
vote
1
reply
1.5k
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Generating RPKM data from dds (DESeq2 pipeline)
deseq2 dds RPKM
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
32
votes
16
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21k
views
difference among tximport scaledTPM, lengthScaledTPM and the original TPM output by salmon/kallisto
tximport deseq2 TPM RPKM rnaseq
updated 7.7 years ago by ▴ 20 • written 9.5 years ago by ▴ 200
3
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1
reply
1.6k
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RMS question in MEDIPS
RMS RPKM MEDIPS
updated 7.8 years ago by ▴ 570 • written 7.9 years ago by ▴ 10
2
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14
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9.8k
views
Calculating rpkm from counts data?
r featurecounts rpkm tpm edger
updated 2.8 years ago by ▴ 20 • written 8.4 years ago by ▴ 120
3
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2
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2.2k
views
AnnotationHub: A RPKM data.frame of Epigenomics RoadMap Project seems strange
annotationhub roadmap project rpkm data.frame
9.2 years ago wcstcyx ▴ 30
4
votes
2
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6.1k
views
How to run the rpkm function of edgeR
edger rpkm
updated 9.8 years ago by ★ 29k • written 9.8 years ago by ▴ 20
4
votes
10
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6.3k
views
Finding gene lengths of mm10 to calculate rpkm from count matrix of rna-seq dataset
rpkm gene length count matrix edgeR rsubread
10.2 years ago AB ▴ 110
4
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1
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2.9k
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Get source code for rpkm() function in edgeR
edgeR rpkm source code
updated 10.7 years ago by 25k • written 10.7 years ago by ▴ 10
7
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4
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3.3k
views
Gene expression between two copies of same gene:use counts or RPKM or FPKM?
count rnaseq rpkm fpkm edgeR
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 10
3
votes
3
replies
8.1k
views
Find DEG from RNA-seq: What if have only RPKM data?
deg rna-seq rpkm
updated 10.8 years ago by ▴ 370 • written 10.8 years ago by • 0
0
votes
5
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3.2k
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count tables created with easyRNASeq and the rpkm() function from edgeR
easyrnaseq edger rpkm
updated 10.9 years ago by ▴ 320 • written 10.9 years ago by ▴ 80
4
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4
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23k
views
edgeR rpkm function
edger rpkm
updated 2.8 years ago by 53k • written 10.9 years ago by ▴ 30
3
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2
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17k
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how to calculate gene length to be used in rpkm() in edgeR
RNASeq edgeR rpkm
updated 2.7 years ago by 53k • written 11.7 years ago by ★ 1.0k
2
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1
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2.0k
views
Shoud I use "aligned reads" or total reads (aligned + unassigned) to the RPKM value?
rnaseq R rsubread rpkm
updated 11.2 years ago by 68k • written 11.2 years ago by • 0
20 results • Page 1 of 1
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