Bioconductor RUV

Showing : RUV • reset

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660

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SpikeIn RUVSeq DESeq2 RUV

updated 8 months ago by Michael Love 43k • written 8 months ago by Ειρήνη • 0

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1.9k

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RUV4 RUV Microarray

3.9 years ago Antonio • 0

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2.1k

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RUVSeq RUV RNA-seq

updated 4.5 years ago by James W. MacDonald 68k • written 4.5 years ago by karissa.barthelson ▴ 20

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2.1k

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RUV Nanostring RUV-III

updated 4.9 years ago by hermidalc ▴ 20 • written 5.6 years ago by raf4 ▴ 30

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1.3k

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deseq2 RUV batch highly variable genes

updated 5.1 years ago by tmms • 0 • written 5.1 years ago by f_pardow • 0

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1.5k

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deseq2 ruv batch

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by r.tom • 0

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1.1k

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missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv

6.6 years ago peter.fransquet • 0

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1.1k

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methylation missmethyl RUV batch effect

6.9 years ago RC • 0

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1.2k

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missmethyl RUV control probes

6.9 years ago Taub, Margaret ▴ 10

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3.1k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 7.6 years ago by davide risso ▴ 980 • written 7.6 years ago by Nik Tuzov ▴ 90

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2.9k

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RUV ruvseq ruvr ruvnormalize single cell

7.6 years ago Nik Tuzov ▴ 90

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1.1k

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rnaseq ruv differential gene expression R

7.7 years ago manish20072013 • 0

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3.6k

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RUV single cell batch effect

8.0 years ago ribioinfo ▴ 100

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1.2k

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ruv

8.1 years ago sasha • 0

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2.7k

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ruvseq ruvg ruv

updated 8.1 years ago by davide risso ▴ 980 • written 8.2 years ago by weiwsmiling • 0

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1.3k

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methylation gene expression sva batch effect ruv

8.3 years ago carleshf ▴ 10

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1.9k

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ruvseq RUV ruvnormalize ruvg

8.7 years ago anthonycolombo60 • 0

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2.7k

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ruvseq ruv microrna

9.7 years ago • updated 9.6 years ago sergio.espeso-gil • 0

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1.9k

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ruv microarray

updated 9.7 years ago by gthm ▴ 30 • written 9.9 years ago by Pauly Lin ▴ 160

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3.0k

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ruvseq ruv

updated 9.9 years ago by davide risso ▴ 980 • written 9.9 years ago by Pauly Lin ▴ 160

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3.2k

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RUV ruvseq rnaseq

9.9 years ago sergio.espeso-gil • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k