Bioconductor RUV

Showing : RUV • reset

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892

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SpikeIn RUVSeq DESeq2 RUV

updated 14 months ago by Michael Love 43k • written 14 months ago by Ειρήνη • 0

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2.1k

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RUV4 RUV Microarray

4.4 years ago Antonio • 0

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2.3k

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RUVSeq RUV RNA-seq

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by karissa.barthelson ▴ 20

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2.2k

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RUV Nanostring RUV-III

updated 5.4 years ago by hermidalc ▴ 20 • written 6.1 years ago by raf4 ▴ 30

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1.5k

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deseq2 RUV batch highly variable genes

updated 5.6 years ago by tmms • 0 • written 5.6 years ago by f_pardow • 0

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1.6k

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deseq2 ruv batch

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by r.tom • 0

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1.3k

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missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv

7.1 years ago peter.fransquet • 0

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1.2k

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methylation missmethyl RUV batch effect

7.4 years ago RC • 0

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1.3k

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missmethyl RUV control probes

7.4 years ago Taub, Margaret ▴ 10

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3.4k

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ruv ruvseq ruvnormalize single-cell zero-inflated

updated 8.1 years ago by davide risso ▴ 980 • written 8.1 years ago by Nik Tuzov ▴ 90

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3.1k

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RUV ruvseq ruvr ruvnormalize single cell

8.1 years ago Nik Tuzov ▴ 90

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1.2k

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rnaseq ruv differential gene expression R

8.2 years ago manish20072013 • 0

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3.8k

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RUV single cell batch effect

8.5 years ago ribioinfo ▴ 100

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1.3k

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ruv

8.5 years ago sasha • 0

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2.8k

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ruvseq ruvg ruv

updated 8.6 years ago by davide risso ▴ 980 • written 8.7 years ago by weiwsmiling • 0

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1.4k

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methylation gene expression sva batch effect ruv

8.7 years ago carleshf ▴ 10

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2.0k

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ruvseq RUV ruvnormalize ruvg

9.2 years ago anthonycolombo60 • 0

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2.8k

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ruvseq ruv microrna

10.2 years ago • updated 10.1 years ago sergio.espeso-gil • 0

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2.0k

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ruv microarray

updated 10.2 years ago by gthm ▴ 30 • written 10.3 years ago by Pauly Lin ▴ 160

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3.1k

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ruvseq ruv

updated 10.4 years ago by davide risso ▴ 980 • written 10.4 years ago by Pauly Lin ▴ 160

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3.5k

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RUV ruvseq rnaseq

10.4 years ago sergio.espeso-gil • 0

21 results • Page 1 of 1

Recent ...

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Comment: Heatmap of the Count Matrix by ArnulfoByrd • 0

Perhaps PCA loadings offer a more comprehensive perspective. Now, thinking back, I recall struggling with a similar data reduction dilemma …

Answer: readBam vs read_bam_insert_metrics by James W. MacDonald 68k

Depends on what you mean by input. If you mean to ask if you use `readBam` to generate something to use as an argument to `read_bam_insert_…

Answer: How to construct a BSgenome object from a custom genome assembly using BSgenomeF by James W. MacDonald 68k

There is an example in the help page for `forgeBSgenomePkgFromTwobitFile`. Have you tried emulating that?

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

Votes

Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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