Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
RUVnormalize
•
reset
1
vote
0
replies
282
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
4 months ago
Erdi
▴ 10
0
votes
0
replies
264
views
determine k during RUVSeq
RUVSeq
RUVnormalize
6 months ago
Ειρήνη
• 0
1
vote
2
replies
1.1k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
19 months ago
AZ
▴ 30
0
votes
4
replies
2.8k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.4 years ago
Mohamed
▴ 30
0
votes
1
reply
727
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
6.1 years ago
losik
• 0
0
votes
2
replies
1.2k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.9 years ago by
Dario Strbenac
★ 1.5k • written 6.9 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.9k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.3 years ago by
davide risso
▴ 980 • written 7.3 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
2.7k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.3 years ago
Nik Tuzov
▴ 90
2
votes
1
reply
1.5k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.4 years ago by
davide risso
▴ 980 • written 7.4 years ago by
manish20072013
• 0
2
votes
1
reply
1.8k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.4 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.7k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.6 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.5k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
9.0 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.4k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.4 years ago by
laurent.jacob
▴ 10 • written 9.5 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.4k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.4 years ago by
laurent.jacob
▴ 10 • written 9.5 years ago by
Dario Strbenac
★ 1.5k
14 results • Page
1 of 1
Recent ...
Replies
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.5k
Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
mohammedtoufiq91
▴ 10
@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…
Comment: athPkgBuilder data source :missing probesets
by
bobihanigujjar
• 0
In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Comment: Crossover design with limma
by
SamGG
▴ 360
IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…
Answer: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.5k
You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…
Votes
Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
Comment: makeContrastsDream for Interaction
Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
Awards
• All
Popular Question
to
Marek Gierlinski
▴ 30
Scholar
to
Gordon Smyth
52k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Hans-Ulrich Klein
▴ 330
Popular Question
to
phelankj
• 0
Locations
• All
France,
1 minute ago
United Kingdom,
46 minutes ago
United States,
59 minutes ago
United Kingdom,
4 hours ago
United States,
4 hours ago
Traffic: 579 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6