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RUVnormalize
•
reset
1
vote
0
replies
269
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
4 months ago
Erdi
▴ 10
0
votes
0
replies
255
views
determine k during RUVSeq
RUVSeq
RUVnormalize
6 months ago
Ειρήνη
• 0
1
vote
2
replies
1.1k
views
Removing Unwanted Variations
DESeq2
NanoStringNCTools
RUVnormalize
RUVSeq
DifferentialExpression
19 months ago
AZ
▴ 30
0
votes
4
replies
2.7k
views
Confused about using RUVg in getting negative control genes using RUVg
RUVnormalize
R
edgeR
RUVSeq
RUVnormalizeData
2.4 years ago
Mohamed
▴ 30
0
votes
1
reply
721
views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
6.1 years ago
losik
• 0
0
votes
2
replies
1.2k
views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
updated 6.8 years ago by
Dario Strbenac
★ 1.5k • written 6.8 years ago by
massimo.acquaviva.78
• 0
2
votes
9
replies
2.9k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 7.3 years ago by
davide risso
▴ 980 • written 7.3 years ago by
Nik Tuzov
▴ 90
1
vote
3
replies
2.6k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
7.3 years ago
Nik Tuzov
▴ 90
2
votes
1
reply
1.5k
views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
updated 7.4 years ago by
davide risso
▴ 980 • written 7.4 years ago by
manish20072013
• 0
2
votes
1
reply
1.8k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
8.3 years ago
anthonycolombo60
• 0
2
votes
6
replies
1.7k
views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
8.6 years ago
thomas.wolfe
• 0
0
votes
0
replies
1.5k
views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
8.9 years ago
thomas.wolfe
• 0
1
vote
1
reply
1.4k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
updated 9.4 years ago by
laurent.jacob
▴ 10 • written 9.4 years ago by
Cornwell, Adam
▴ 110
2
votes
1
reply
1.4k
views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
updated 9.4 years ago by
laurent.jacob
▴ 10 • written 9.5 years ago by
Dario Strbenac
★ 1.5k
14 results • Page
1 of 1
Recent ...
Replies
Comment: Merge Replicates vs Mixed Model
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
@gabrielhoffman any insight?
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Answer: Is my time course analysis with DESeq2 valid?
by
Michael Love
42k
For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
Mike Smith
★ 6.6k
Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
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