Bioconductor Rcurl

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biomaRT Rcurl phytozome

updated 5.5 years ago by Mike Smith ★ 6.6k • written 5.5 years ago by s.nielsen ▴ 20

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arrayexpress xml rcurl http EBI

updated 7.2 years ago by Wolfgang Huber ★ 13k • written 7.2 years ago by Bernd Klaus ▴ 610

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3.0k

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microarrays xml RCurl libxml2 libcurl

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by farahqureshi5 • 0

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14k

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deseq2 rcurl annotate genefilter geneplotter

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by Rémi Willamme ▴ 10

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5.8k

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biomart proxy rcurl

updated 9.1 years ago by hygine ▴ 140 • written 9.1 years ago by enricoferrero ▴ 660

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RCurl

9.4 years ago yueli7 ▴ 20

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3.1k

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scan.upc geoquery rcurl

9.9 years ago lep ▴ 90

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6.9k

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Install cummerbund Rcurl xml

updated 10.2 years ago by Martin Morgan 25k • written 10.2 years ago by dnajuice ▴ 20

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Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

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Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

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