Bioconductor SVAseq

Showing : SVAseq • reset

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5.2k

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deseq2 svaseq

7.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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3.7k

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deseq2 sva svaseq pca

7.9 years ago Peter Alto ▴ 10

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3.1k

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DESeq2 sva svaseq batch effect correction

6.3 years ago L_K • 0

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2.5k

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limma sva svaseq

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Bogdan ▴ 670

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2.4k

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sva svaseq batcheffectcorrection

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by szenitha ▴ 20

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2.2k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

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1.8k

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svaseq dexseq

updated 7.2 years ago by Alejandro Reyes ★ 1.9k • written 7.2 years ago by tofukaj • 0

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1.7k

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deseq2 svaseq

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by gpalidwor ▴ 10

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1.7k

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sva svaseq

updated 6.9 years ago by Guido Hooiveld ★ 3.9k • written 6.9 years ago by wamiqsaifi • 0

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1.6k

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deseq2 sva svaseq

updated 7.7 years ago by Michael Love 41k • written 7.7 years ago by szenitha ▴ 20

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1.5k

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deseq2 svaseq

5.3 years ago bioinfo • 0

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1.5k

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ruvseq svaseq edaseq

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by llo ▴ 10

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1.4k

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edger sva svaseq limma

updated 5.9 years ago by Ryan C. Thompson ★ 7.9k • written 5.9 years ago by cats_dogs ▴ 20

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1.2k

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sva svaseq batch effect batch effects batch effect correction

6.7 years ago vedran.franke • 0

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1.1k

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RNASeq sva svaseq

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by Bex • 0

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1.1k

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svaseq batcheffectcorrection

6.5 years ago burcu.atasu • 0

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917

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svaseq sva

5.1 years ago flippy23 • 0

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871

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MEDIPS svaseq sva

updated 5.3 years ago by Lukas Chavez ▴ 570 • written 5.3 years ago by tofukaj • 0

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780

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limma sva Leafcutter SVAseq

2.6 years ago georgia.katsoula ▴ 40

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759

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sva svaseq surrogate variable analysis

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by Mozart ▴ 30

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615

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RUVSeq svaseq

21 months ago Tongjun • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0