Showing : StatisticalMethod • reset
3
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4
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593
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p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 3 months ago by • 0 • written 4 months ago by • 0
0
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0
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266
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
9 months ago user_bioinfo • 0
1
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2
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492
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 13 months ago by • 0
0
votes
1
reply
756
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 19 months ago by ★ 1.4k • written 19 months ago by • 0
0
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0
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661
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
20 months ago pierre.devillemereuil • 0
0
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3
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1.5k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
2
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2
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3.9k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
2.0 years ago Linton • 0
1
vote
2
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1.3k
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
2.1 years ago Sabiha ▴ 20
2
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2
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1.1k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
2.1 years ago Manthos • 0
6
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2
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2.3k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 2.2 years ago by 53k • written 2.2 years ago by ▴ 10
3
votes
2
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1.2k
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 30
2
votes
3
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3.8k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by ▴ 10
2
votes
4
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1.2k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.9 years ago Loïc • 0
0
votes
2
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1.4k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.9 years ago rcreswell01 • 0
1
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3
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1.8k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.9 years ago by 53k • written 2.9 years ago by ▴ 10
0
votes
1
reply
860
views
DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 3.1 years ago by 43k • written 3.2 years ago by ▴ 10
0
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0
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1.0k
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
3.2 years ago Laurent Gatto 1.6k
1
vote
2
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1.8k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
3.3 years ago walkerrh95 • 0
0
votes
0
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1.4k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.3 years ago gaow • 0
0
votes
0
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856
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.8 years ago dong ▴ 10
2
votes
3
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6.4k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.7 years ago by • 0 • written 4.0 years ago by • 0
6
votes
4
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1.6k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
4.0 years ago Giovanni • 0
2
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7
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2.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.3 years ago Field -Ye • 0
0
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2
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2.2k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.6 years ago Aneesha • 0
0
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1
reply
1.2k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.7 years ago by 43k • written 4.7 years ago by • 0
6
votes
6
replies
2.6k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.8 years ago by 53k • written 4.8 years ago by ▴ 10
1
vote
3
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1.7k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
0
votes
0
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1.8k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
5.0 years ago jol.espinoz ▴ 40
0
votes
2
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1.1k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by • 0
29 results • Page 1 of 1
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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