Showing : StatisticalMethod • reset
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
22 days ago user_bioinfo • 0
1
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2
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302
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 4 months ago by • 0
0
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1
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464
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 10 months ago by ★ 1.4k • written 10 months ago by • 0
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382
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
11 months ago pierre.devillemereuil • 0
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3
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1.1k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 11 months ago by ★ 4.8k • written 11 months ago by • 0
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3.0k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
15 months ago Linton • 0
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2
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1.0k
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
16 months ago Sabiha ▴ 20
2
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2
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847
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
17 months ago Manthos • 0
5
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2
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1.8k
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 17 months ago by 52k • written 17 months ago by ▴ 10
3
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2
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989
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 22 months ago by 52k • written 22 months ago by ▴ 30
2
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3
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3.2k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by ▴ 10
2
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4
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1.1k
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.2 years ago • updated 2.1 years ago Loïc • 0
0
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2
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1.2k
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.2 years ago rcreswell01 • 0
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3
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1.4k
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.2 years ago by 52k • written 2.2 years ago by ▴ 10
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730
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.4 years ago by 43k • written 2.5 years ago by ▴ 10
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0
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853
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.5 years ago Laurent Gatto 1.6k
1
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2
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1.4k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.6 years ago walkerrh95 • 0
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0
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1.2k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.6 years ago gaow • 0
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753
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.1 years ago dong ▴ 10
2
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3
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5.5k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.0 years ago by • 0 • written 3.2 years ago by • 0
6
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4
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1.3k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.2 years ago Giovanni • 0
2
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7
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1.9k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.6 years ago Field -Ye • 0
0
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2
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1.9k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.8 years ago Aneesha • 0
0
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1
reply
1.0k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.9 years ago by 43k • written 3.9 years ago by • 0
6
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6
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2.2k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.1 years ago by 52k • written 4.1 years ago by ▴ 10
1
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3
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1.4k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.2 years ago by 43k • written 4.2 years ago by • 0
0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.3 years ago jol.espinoz ▴ 40
0
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2
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941
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
28 results • Page 1 of 1
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Answer: Version conflict when pushing to scQTLtools devel branch by shepherl 4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Comment: DiffBind can't find a DAR by Mengjun • 0
The details about this question: I have 4 samples with 2 conditions( ctrl_1, ctrl_2, ko_1, ko_2), i use these 4 samples as input. Here is …
Comment: DiffBind can't find a DAR by Mengjun • 0
Thank you very much for pointing out this shortcoming. I will improve it.
Comment: samtools loading in R by Charlie • 0
This is obviously a very late answer but I had a similar error: > sh: samtools: command not found > > sh: samtools: command not found > …
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by njmcdirect • 0
https://www.www-njmcdirect.run/
Votes
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: biomaRt server error, and mirrors do not help
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