Showing : StatisticalMethod • reset
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 10 days ago by ★ 1.4k • written 11 days ago by • 0
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
28 days ago pierre.devillemereuil • 0
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 6 weeks ago by ★ 4.2k • written 6 weeks ago by • 0
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
5 months ago Linton • 0
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2
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
5 months ago Sabiha ▴ 20
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
7 months ago • updated 6 months ago Manthos • 0
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 7 months ago by 51k • written 7 months ago by ▴ 10
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 11 months ago by 51k • written 11 months ago by ▴ 10
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 14 months ago by ★ 4.2k • written 15 months ago by • 0
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778
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
16 months ago • updated 15 months ago Loïc • 0
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
16 months ago rcreswell01 • 0
1
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 16 months ago by 51k • written 16 months ago by ▴ 10
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 18 months ago by 42k • written 19 months ago by ▴ 10
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
19 months ago Laurent Gatto 1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
20 months ago walkerrh95 • 0
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
21 months ago gaow • 0
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587
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
2.2 years ago dong ▴ 10
2
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3
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3.4k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.1 years ago by • 0 • written 2.4 years ago by • 0
6
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4
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1.0k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
2.4 years ago Giovanni • 0
2
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7
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1.5k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
2.8 years ago • updated 2.7 years ago Field -Ye • 0
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1.4k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.0 years ago Aneesha • 0
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.1 years ago by 42k • written 3.1 years ago by • 0
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1.7k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 3.3 years ago by 51k • written 3.3 years ago by ▴ 10
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3
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1.1k
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 3.3 years ago by 42k • written 3.3 years ago by • 0
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1.3k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
3.4 years ago jol.espinoz ▴ 40
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p adjusted value not available
StatisticalMethod DESeq2
updated 3.6 years ago by ★ 3.9k • written 3.6 years ago by • 0
26 results • Page 1 of 1
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Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
I think Guido already answered this question.
Answer: biomaRt has encountered an unknown server error while using getLDS by miriam.lloriansopena • 0
This has worked very well for me. Thank you for your help!!
Answer: biomaRt has encountered an unknown server error while using getLDS by Mike Smith ★ 6.5k
There's a lot to unpack here! First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba by Mallory • 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Votes
Answer: R: Confused about Limma R package output being LogFC or Log2FC
Answer: biomaRt has encountered an unknown server error while using getLDS
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
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