Showing : StatisticalMethod • reset
3
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3
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224
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p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 16 days ago by 52k • written 17 days ago by • 0
0
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0
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192
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
5 months ago user_bioinfo • 0
1
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2
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402
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 9 months ago by • 0
0
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1
reply
560
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 15 months ago by ★ 1.4k • written 15 months ago by • 0
0
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0
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536
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
15 months ago pierre.devillemereuil • 0
0
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3
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1.3k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 16 months ago by ★ 4.9k • written 16 months ago by • 0
2
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2
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3.5k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
20 months ago Linton • 0
1
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2
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1.2k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
20 months ago Sabiha ▴ 20
2
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2
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973
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
21 months ago Manthos • 0
5
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2
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2.1k
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 22 months ago by 52k • written 22 months ago by ▴ 10
3
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2
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1.1k
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.2 years ago by 52k • written 2.2 years ago by ▴ 30
2
votes
3
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3.5k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.4 years ago by ★ 4.9k • written 2.4 years ago by ▴ 10
2
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4
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1.1k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.5 years ago Loïc • 0
0
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2
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1.3k
views
Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.5 years ago rcreswell01 • 0
1
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3
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1.6k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.6 years ago by 52k • written 2.6 years ago by ▴ 10
0
votes
1
reply
806
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 10
0
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0
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946
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.8 years ago Laurent Gatto 1.6k
1
vote
2
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1.6k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.9 years ago walkerrh95 • 0
0
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0
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1.3k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.0 years ago gaow • 0
0
votes
0
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799
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.4 years ago dong ▴ 10
2
votes
3
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6.0k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.3 years ago by • 0 • written 3.6 years ago by • 0
6
votes
4
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1.5k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.6 years ago Giovanni • 0
2
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7
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2.1k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.0 years ago Field -Ye • 0
0
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2
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2.1k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.2 years ago Aneesha • 0
0
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1
reply
1.1k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.3 years ago by 43k • written 4.3 years ago by • 0
6
votes
6
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2.4k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 10
1
vote
3
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1.6k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.5 years ago by 43k • written 4.5 years ago by • 0
0
votes
0
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1.6k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.6 years ago jol.espinoz ▴ 40
0
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2
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1.0k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
29 results • Page 1 of 1
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Comment: Biological Pathway Database by peterparkerrbu • 0
Having the pathways available in PowerPoint format is a huge plus, as it makes them easy to use for presentations and teaching. The ability…
Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0
Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks
Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0
I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…
Comment: ROAST compare results with complex design by Gordon Smyth 52k
It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.
Answer: ROAST compare results with complex design by James W. MacDonald 68k
You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…
Votes
Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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