Showing : StatisticalMethod • reset
3
votes
4
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323
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p-adjusted values in multiple comparisons
StatisticalMethod limma RnaSeqSampleSizeData
updated 6 days ago by • 0 • written 5 weeks ago by • 0
0
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0
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200
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
6 months ago user_bioinfo • 0
1
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2
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409
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 10 months ago by • 0
0
votes
1
reply
571
views
Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 15 months ago by ★ 1.4k • written 15 months ago by • 0
0
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0
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547
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
16 months ago pierre.devillemereuil • 0
0
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3
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1.4k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 16 months ago by ★ 4.9k • written 16 months ago by • 0
2
votes
2
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3.5k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
20 months ago Linton • 0
1
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2
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1.2k
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
21 months ago Sabiha ▴ 20
2
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2
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1.0k
views
DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
22 months ago Manthos • 0
5
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2
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2.1k
views
DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 23 months ago by 53k • written 23 months ago by ▴ 10
3
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2
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1.1k
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 2.2 years ago by 53k • written 2.3 years ago by ▴ 30
2
votes
3
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3.6k
views
deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 2.5 years ago by ★ 4.9k • written 2.5 years ago by ▴ 10
2
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4
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1.2k
views
Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.6 years ago Loïc • 0
0
votes
2
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1.3k
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.6 years ago rcreswell01 • 0
1
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3
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1.6k
views
Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 10
0
votes
1
reply
812
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.8 years ago by 43k • written 2.9 years ago by ▴ 10
0
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0
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960
views
Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.9 years ago Laurent Gatto 1.6k
1
vote
2
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1.7k
views
Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
3.0 years ago walkerrh95 • 0
0
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0
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1.3k
views
Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
3.0 years ago gaow • 0
0
votes
0
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803
views
Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.5 years ago dong ▴ 10
2
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3
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6.0k
views
Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 3.4 years ago by • 0 • written 3.6 years ago by • 0
6
votes
4
replies
1.5k
views
Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.7 years ago Giovanni • 0
2
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7
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2.1k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.0 years ago Field -Ye • 0
0
votes
2
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2.1k
views
To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
4.3 years ago • updated 4.2 years ago Aneesha • 0
0
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1
reply
1.1k
views
DESeq2 Design matrix
StatisticalMethod DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
6
votes
6
replies
2.4k
views
limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.5 years ago by 53k • written 4.5 years ago by ▴ 10
1
vote
3
replies
1.6k
views
How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
votes
0
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1.7k
views
Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.7 years ago jol.espinoz ▴ 40
0
votes
2
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1.0k
views
p adjusted value not available
StatisticalMethod DESeq2
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
29 results • Page 1 of 1
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Answer: Sharing a collection of datasets in ExperimentHub by shepherl 4.2k
107 packages would be a lot! It is certainly possible (and recommended) to implement one package that utilizes ExperimentHub for controlli…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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