Showing : StatisticalMethod • reset
1
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Detecting genomic signatures of drug resistance breast cancer in transcriptomic data
TransOmicsData signatureSearchData StatisticalMethod
written 4 months ago by • 0
0
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1
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442
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Can we compare 3 different experimental conditions with DESeq2?
DESeq2 StatisticalMethod
updated 9 months ago by ★ 1.4k • written 9 months ago by • 0
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360
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Job: Post-Doc: Development of a new method to study the distribution of the effect sizes of QTL
StatisticalMethod Evolution QuantitativeTrailLocus Genetics JobPosting
10 months ago pierre.devillemereuil • 0
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3
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1.0k
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Differences in differential analysis methods for RNA-Seq
DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq
updated 10 months ago by ★ 4.7k • written 10 months ago by • 0
2
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2
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2.8k
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DESeq2 median of ratios normalization instead of VST or rlog for ordinations?
DESeq2 medianofratiostransformation StatisticalMethod Normalization dispersion
14 months ago Linton • 0
1
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2
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973
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How to perform longitudinal analysis using EdgeR
StatisticalMethod FoldChange edgeR RNASeq
15 months ago Sabiha ▴ 20
2
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2
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812
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
16 months ago Manthos • 0
5
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2
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1.7k
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DecideTest vs topTAGs in edgeR
RNAseq StatisticalMethod edgeR
updated 17 months ago by 52k • written 17 months ago by ▴ 10
3
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2
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969
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Does this RNAseq experiment require a repeated measures approach?
StatisticalMethod RNASeqData edgeR DESeq2
updated 21 months ago by 52k • written 21 months ago by ▴ 30
2
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3
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3.1k
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deseq2 normalization and statistical method
normalization deseq2 StatisticalMethod
updated 24 months ago by ★ 4.7k • written 2.0 years ago by ▴ 10
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4
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1.0k
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Model comparison in mean-dispersion trend in DESeq2
DESeq2 StatisticalMethod
2.1 years ago Loïc • 0
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1.1k
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Using Multi-Dimensional Scaling (MDS) to produce a vector in order to account for patient bias when constructing DGE lists from RNA-seq datasets in R?
PrincipalComponent StatisticalMethod edgeR MultidimensionalScaling Normalization
2.1 years ago rcreswell01 • 0
1
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3
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Limma-voom with inverse probability weights (similar to sample weights)
limma limma-voom StatisticalMethod
updated 2.1 years ago by 52k • written 2.1 years ago by ▴ 10
0
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1
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721
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DESeq2 paired multifactor test
DESeq2 StatisticalMethod
updated 2.3 years ago by 43k • written 2.4 years ago by ▴ 10
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847
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Job: Academic position in Non-clinical Biostatistics
JobPosting StatisticalMethod
2.4 years ago Laurent Gatto 1.6k
1
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1.4k
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Limma adj.p.value the same for many different p.values
limmaGUI limma adj.p.value StatisticalMethod
2.5 years ago walkerrh95 • 0
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0
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1.2k
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Job: Postdoctoral research scientist in computational biology/statistical genetics/functional genomics at Columbia University, USA
Alzheimer's StatisticalMethod Genetics molecularQTL FunctionalGenomics
2.5 years ago gaow • 0
0
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0
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743
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Should I adjust p value for multi-levels (groups) and multi-variables?
StatisticalMethod
3.0 years ago dong ▴ 10
2
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3
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5.3k
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Differential gene expression and (adjusted) p-values
edgeR StatisticalMethod
updated 2.9 years ago by • 0 • written 3.1 years ago by • 0
6
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4
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1.3k
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Limma prametrization
limm MathematicalBiology limmaGUI StatisticalMethod
3.2 years ago Giovanni • 0
2
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7
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1.9k
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EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
3.5 years ago Field -Ye • 0
0
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2
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1.9k
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To retrieve the transcript from gff file with the longest isoform
FunctionalAnnotation StatisticalMethod
3.8 years ago • updated 3.7 years ago Aneesha • 0
0
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1
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989
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DESeq2 Design matrix
StatisticalMethod DESeq2
updated 3.8 years ago by 43k • written 3.9 years ago by • 0
6
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6
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2.1k
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limma:arrayWeights() and the "prior.n" parameter for biological replicates? (PROTEOMICS)
Proteomics limma StatisticalMethod
updated 4.0 years ago by 52k • written 4.0 years ago by ▴ 10
1
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3
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1.4k
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How to assign random effect factor in DESeq2 desing?
StatisticalMethod DESeq2 phyloseq
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
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0
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1.5k
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Why is `scale-free topology` estimated as -sign(slope) * (R^2) in WGCNA?
Network StatisticalMethod WGCNA ExpressionData
4.2 years ago jol.espinoz ▴ 40
0
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2
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918
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p adjusted value not available
StatisticalMethod DESeq2
updated 4.3 years ago by ★ 4.0k • written 4.3 years ago by • 0
27 results • Page 1 of 1
Recent ...
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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