Bioconductor Warning

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3.0k

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rmarkdown suppressWarning warning

updated 2.7 years ago by Mike Smith ★ 6.6k • written 3.8 years ago by Wolfgang Huber ★ 13k

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3.2k

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BioGenerics warning

5.3 years ago ullrich ▴ 20

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3.7k

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DelayedArray warning installation

updated 5.3 years ago by Hervé Pagès 16k • written 5.3 years ago by inzirio ▴ 10

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Bioconductor CMD check warning

updated 6.7 years ago by Martin Morgan 25k • written 6.7 years ago by dong ▴ 10

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PureCN Warning

updated 7.5 years ago by markus.riester ▴ 130 • written 7.5 years ago by twtoal ▴ 10

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bioconductor package development R roxygen2 warning

7.9 years ago clarisbaby • 0

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3.3k

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bioccheck roxygen2 warning bioc-devel package development

updated 7.9 years ago by Lluís Revilla Sancho ▴ 760 • written 7.9 years ago by Paul Brennan ▴ 10

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2.9k

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warning text read.delim

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by niutster • 0

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dexseq fit matrix warning

updated 3.9 years ago by koushik • 0 • written 8.7 years ago by Assa Yeroslaviz ★ 1.5k

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warning message warning R rhdf5

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by matiasb • 0

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MakeTXDCfromUCSC GenomicFeatures warning

updated 10.2 years ago by Marc Carlson ★ 7.2k • written 10.2 years ago by Lillyhchen ▴ 10

11 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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