Bioconductor Warning

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rmarkdown suppressWarning warning

updated 22 months ago by Mike Smith ★ 6.6k • written 3.0 years ago by Wolfgang Huber ★ 13k

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BioGenerics warning

4.5 years ago ullrich ▴ 20

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3.0k

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DelayedArray warning installation

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by inzirio ▴ 10

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Bioconductor CMD check warning

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by dong ▴ 10

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1.2k

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PureCN Warning

updated 6.6 years ago by markus.riester ▴ 130 • written 6.6 years ago by twtoal ▴ 10

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bioconductor package development R roxygen2 warning

7.1 years ago clarisbaby • 0

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bioccheck roxygen2 warning bioc-devel package development

updated 7.1 years ago by Lluís Revilla Sancho ▴ 760 • written 7.1 years ago by Paul Brennan ▴ 10

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2.4k

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warning text read.delim

updated 7.4 years ago by Gordon Smyth 52k • written 7.4 years ago by niutster • 0

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2.2k

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dexseq fit matrix warning

updated 3.1 years ago by koushik • 0 • written 7.8 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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warning message warning R rhdf5

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by matiasb • 0

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1.9k

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MakeTXDCfromUCSC GenomicFeatures warning

updated 9.4 years ago by Marc Carlson ★ 7.2k • written 9.4 years ago by Lillyhchen ▴ 10

11 results • Page 1 of 1

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Answer: Cannot install GO.db and org.Hs.eg.db by James W. MacDonald 67k

You might try tracing the namespace loading. ``` Sys.setenv("_R_TRACE_LOADNAMESPACE_"="2") install("org.Hs.eg.db") ``` And see if th…

Answer: p value is 0, padj is 0 by James W. MacDonald 67k

It is quite possible for a very small p-value to remain very small after multiplicity adjustment. I don't know the cutoff for `DESeq2` to r…

Answer: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

You don't need `rtracklayer` for this (not directly anyway), but instead you need `txdbmaker` which you can use to make a `TxDb` object tha…

Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k

We will further develop the junction quantification module to support the use of user-provided annotation data for annotating detected junc…

Comment: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by georgii.vdovin • 0

Thank you!

Votes

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

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Popular Question to giulia.gentile ▴ 10