Showing : arrayQualityMetrics • reset
10
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10
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3.8k
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
4
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6
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4.5k
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arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
0
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6
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2.0k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.9 years ago by ★ 2.0k • written 12.9 years ago by ▴ 110
0
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3
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1.1k
views
need help regarding quality assessment of raw data
arrayQualityMetrics arrayQualityMetrics
updated 11.4 years ago by ★ 13k • written 11.4 years ago by ▴ 20
6
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11
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3.8k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.9 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
0
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8
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1.7k
views
Problems using arrayQualityMetrics
Cancer arrayQualityMetrics Cancer arrayQualityMetrics
12.2 years ago Rosalind Cutts ▴ 20
0
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6
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1.4k
views
arrayQualityMetrics error with MAList
convert arrayQualityMetrics convert arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 10
0
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4
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1.4k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.8 years ago by ★ 5.5k • written 15.8 years ago by ▴ 200
0
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2
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2.0k
views
arrayQualityMetrics is not working
arrayQualityMetrics arrayQualityMetrics
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 60
0
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16
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2.3k
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arrayQualityMetrics error
arrayQualityMetrics arrayQualityMetrics
updated 13.3 years ago by ▴ 340 • written 13.3 years ago by ▴ 200
0
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3
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633
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array names in arrayQualityMetrics report
arrayQualityMetrics arrayQualityMetrics
12.7 years ago rchavez ▴ 20
0
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3
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1.6k
views
arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.4 years ago by ▴ 630 • written 14.4 years ago by ▴ 160
0
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10
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1.7k
views
arrayQualityMetrics not producing all diagnostic plots
arrayQualityMetrics arrayQualityMetrics
13.6 years ago James F. Reid ▴ 610
0
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2
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773
views
arrayQualityMetrics -weighted bad spots Imagene files
arrayQualityMetrics arrayQualityMetrics
updated 15.2 years ago by ▴ 280 • written 15.2 years ago by ▴ 10
0
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3
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1.3k
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arrayQualityMetrics produces non-interactive PCA plot (Figure 3)
arrayQualityMetrics arrayQualityMetrics
12.5 years ago Vladimir Zhurov ▴ 70
2
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4
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2.3k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.4 years ago by ★ 13k • written 8.4 years ago by ▴ 30
0
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4
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1.8k
views
arrayQualityMetrics package - bugs and errors
limma affyPLM arrayQualityMetrics limma affyPLM arrayQualityMetrics
updated 12.3 years ago by ★ 13k • written 12.3 years ago by ▴ 90
0
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8
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2.4k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA GO cdf affy arrayQualityMetrics miRNA GO cdf affy arrayQualityMetrics
updated 11.5 years ago by 66k • written 11.5 years ago by ▴ 290
0
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2
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1.2k
views
Bug in cleanUpPhenoData
arrayQualityMetrics
updated 7.5 years ago by ★ 13k • written 7.5 years ago by • 0
0
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2
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1.5k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
11.9 years ago Alogmail2@aol.com ▴ 90
0
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3
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1.5k
views
arrayQualityMetrics does not produce interactive plots
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ▴ 10 • written 10.6 years ago by ★ 13k
0
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2
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1.2k
views
ArrayQualityMetrics: Problem with labels in plots
Annotation arrayQualityMetrics Annotation arrayQualityMetrics
14.6 years ago elliot harrison ▴ 230
0
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3
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781
views
Missing summary in HTML reports
arrayQualityMetrics arrayQualityMetrics
updated 15.9 years ago by ▴ 280 • written 15.9 years ago by ▴ 40
0
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4
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1.4k
views
svg error in arrayQualityMetrics
GO arrayQualityMetrics GO arrayQualityMetrics
updated 10.2 years ago by ▴ 750 • written 10.2 years ago by ▴ 300
1
vote
2
replies
2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.2 years ago by 50k • written 8.2 years ago by • 0
0
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8
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5.6k
views
arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 14.2 years ago by ▴ 110 • written 14.2 years ago by ▴ 50
0
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2
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936
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 15.9 years ago by ▴ 280 • written 15.9 years ago by ▴ 280
1
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3
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1.9k
views
Error arrayQualityMetrics
arrayQualityMetrics
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
0
votes
1
reply
3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.9 years ago by ▴ 210 • written 12.9 years ago by ▴ 110
0
votes
1
reply
955
views
arrayQualityMetrics, Outlier
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ▴ 280 • written 15.7 years ago by ▴ 200
0
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1
reply
1.5k
views
arrayQualityMetrics - how do I use this with an MAList object???
Cancer convert arrayQualityMetrics Cancer convert arrayQualityMetrics
updated 15.7 years ago by ▴ 680 • written 15.7 years ago by 25k
0
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1
reply
881
views
arrayQualityMetrics: beutifying the outputs
affy arrayQualityMetrics affy arrayQualityMetrics
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 80
0
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3
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1.0k
views
quality assessment of microarray using arrayQualityMetrics
Microarray Normalization arrayQualityMetrics Microarray Normalization arrayQualityMetrics
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 70
0
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1
reply
1.4k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy limma arrayQualityMetrics affy limma arrayQualityMetrics
updated 12.0 years ago by ★ 13k • written 12.0 years ago by 50k
0
votes
1
reply
829
views
Array quality question
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
0
votes
1
reply
843
views
problem with arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 450
0
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6
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1.4k
views
arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
arrayQualityMetrics arrayQualityMetrics
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
0
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2
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1.2k
views
ArrayQualityMetrics: Problem with labels in plots. A bug??
affyPLM arrayQualityMetrics affyPLM arrayQualityMetrics
updated 14.6 years ago by ▴ 280 • written 14.6 years ago by ▴ 40
0
votes
1
reply
979
views
Error in X11(paste("png::", filename, sep = ""),
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ▴ 200
0
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3
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1.2k
views
arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 16.4 years ago by ▴ 280 • written 16.4 years ago by ▴ 270
1
vote
2
replies
2.6k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.2 years ago Guest User ★ 13k
0
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2
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1.3k
views
arrayQualityMEtrics
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 210
0
votes
1
reply
1.2k
views
QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.6 years ago by ▴ 10
0
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1
reply
1.2k
views
for running arrayQualityMetrics
Preprocessing arrayQualityMetrics Preprocessing arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ★ 4.3k
0
votes
1
reply
961
views
arrayQualityMetrics with R 2.13.0 fails
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 20
0
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14
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2.2k
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 210
0
votes
3
replies
1.2k
views
ArrayQualityMetrics: Problem with labels in plots. A bug??
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ▴ 280 • written 14.6 years ago by ▴ 150
0
votes
1
reply
900
views
Error normalizing merged data sets
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ▴ 910 • written 14.6 years ago by ▴ 70
0
votes
1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.8 years ago by ★ 5.5k • written 15.8 years ago by ▴ 200
0
votes
13
replies
2.3k
views
arrayQualityMetrics error and question
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 280
50 results • Page 1 of 1
Recent ...
Replies
Comment: ChAMP installation issue by Tahirah • 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k
Yes, you can use `limma`.
Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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