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bayesian
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0
votes
3
replies
2.6k
views
Inherits(x,"data.frame") error in SamR
Microarray
Normalization
Preprocessing
Bayesian
Clustering
TimeCourse
Cancer
affy
vsn
LPE
18.2 years ago
McGee, Monnie
▴ 300
0
votes
4
replies
1.3k
views
How to get started with bioconductor ?
Bayesian
limma
Bayesian
limma
updated 20.6 years ago by
Gordon Smyth
50k • written 20.6 years ago by
Luke Whitaker
▴ 20
0
votes
3
replies
1.1k
views
Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian
Classification
limma
bridge
Bayesian
Classification
limma
bridge
19.7 years ago
Gordon Smyth
50k
1
vote
3
replies
1.4k
views
Differential expressiong with two groups in BASiCS
BASiCS
single-cell
bayesian
differential expression
updated 6.2 years ago by
CataVallejos
▴ 10 • written 6.2 years ago by
muad.abdelhay
▴ 10
0
votes
3
replies
1.7k
views
Timeseries loop design analysis using Limma or Maanova?
Bayesian
Clustering
TimeCourse
timecourse
oligo
Bayesian
Clustering
TimeCourse
timecourse
18.2 years ago
Pete
▴ 70
0
votes
6
replies
6.9k
views
DeSeq vs current version of Cuffdiff
Sequencing
Bayesian
Cancer
DESeq
Sequencing
Bayesian
Cancer
DESeq
updated 12.2 years ago by
Stephen Turner
▴ 290 • written 12.2 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.4k
views
Bayesian networks in BioC
Bayesian
Bayesian
updated 17.9 years ago by
Henrik Bengtsson
★ 2.4k • written 17.9 years ago by
Jacob Michaelson
▴ 320
0
votes
10
replies
1.7k
views
objective criterion for identification of outlying arrays by pca
Bayesian
Cancer
Bayesian
Cancer
updated 12.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.5 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.1k
views
Practical utilization of SQN in ST1.0 Gene normalization.
Bayesian
Cancer
oligo
Bayesian
Cancer
oligo
updated 12.5 years ago by
Tim Triche
★ 4.2k • written 12.5 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
1.3k
views
Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Bayesian
graph
Bayesian
graph
updated 12.4 years ago by
Sean Davis
21k • written 12.4 years ago by
Royce Francis
▴ 20
0
votes
1
reply
2.2k
views
TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
Normalization
Bayesian
edgeR
baySeq
DESeq
updated 12.4 years ago by
Smith, Hilary A
▴ 40 • written 12.4 years ago by
Gordon Smyth
50k
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH
Sequencing
miRNA
Microarray
Visualization
Bayesian
Classification
Survival
Yeast
LPE
15.5 years ago
Patrick Aboyoun
★ 1.6k
7
votes
1
reply
12k
views
How does limma t-test work?
Bayesian
limma
Bayesian
limma
updated 11.7 years ago by
James W. MacDonald
65k • written 11.7 years ago by
Jorge Miró
▴ 160
0
votes
2
replies
1.2k
views
BASiCS spike info for single cell RNA sequences or Bayesian statistics help
BASiCS
bayesian
single cell
scrnaseq
updated 6.2 years ago by
CataVallejos
▴ 10 • written 6.2 years ago by
alexandriapinto1
▴ 10
0
votes
1
reply
1.1k
views
Fwd: Presentation 19th June
Bayesian
convert
Bayesian
convert
14.9 years ago
Mark Robinson
★ 1.1k
0
votes
2
replies
1.0k
views
RELATED TO CLUSTERING
Bayesian
Bayesian
updated 12.8 years ago by
Sean Davis
21k • written 12.8 years ago by
sanchita 0804
▴ 50
3
votes
1
reply
1.4k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
CantExitVIM
▴ 10
0
votes
2
replies
1.0k
views
Removing genes from linear model fit advice sought
Microarray
Bayesian
Microarray
Bayesian
updated 14.2 years ago by
Yong Li
▴ 190 • written 14.2 years ago by
stephen sefick
▴ 10
0
votes
1
reply
982
views
blue fuse output and limma
Bayesian
Bayesian
updated 19.7 years ago by
Gordon Smyth
50k • written 19.7 years ago by
marchiem@libero.it
▴ 150
0
votes
2
replies
1.1k
views
analysis with no replication
Bayesian
limma
Bayesian
limma
updated 16.9 years ago by
Richard Pearson
▴ 390 • written 16.9 years ago by
lidaof
▴ 450
0
votes
1
reply
1.0k
views
Limma script - Opinions requested
Bayesian
limma
PROcess
Bayesian
limma
PROcess
13.7 years ago
Gordon Smyth
50k
0
votes
1
reply
1.3k
views
Job Posting in Biostatistics/Statistics
Bayesian
Survival
Cancer
PROcess
ASSET
Bayesian
Survival
Cancer
PROcess
ASSET
updated 21.4 years ago by
Johannes Hüsing
▴ 80 • written 21.4 years ago by
Janusz Kawczak
▴ 10
0
votes
1
reply
1.3k
views
Bioconductor 2.1 is released
SNP
Microarray
SAGE
Annotation
Bayesian
Regression
GUI
CGH
hgu95av2
graph
Rgraphviz
SNP
16.6 years ago
Hervé Pagès
16k
0
votes
1
reply
1.3k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 16.0 years ago by
Patrick Aboyoun
★ 1.6k • written 16.0 years ago by
Martin Morgan
25k
0
votes
0
replies
1.0k
views
Conference announcement: Compstat 2004
Visualization
Bayesian
Classification
Clustering
Regression
Visualization
Bayesian
20.3 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.2k
views
Bioconductor 2.5 is released
Sequencing
miRNA
Microarray
qPCR
Annotation
Network
Bayesian
Regression
CGH
stam
Rintact
14.5 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.1k
views
Bioconductor Digest, Vol 83, Issue 23
Bayesian
ROC
graph
limma
Bayesian
ROC
graph
limma
14.3 years ago
M. Carmen Ruiz de Villa
▴ 10
0
votes
0
replies
17k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
13.9 years ago
David Lyon
▴ 340
0
votes
0
replies
971
views
Limma script - Opinions requested
Bayesian
limma
PROcess
Bayesian
limma
PROcess
13.7 years ago
Orfe, Lisa
▴ 20
0
votes
0
replies
1.4k
views
Bioconductor 2.7 is released
BiocViews
aCGH
Transcription
RNASeq
miRNA
Microarray
Normalization
Network
Bayesian
aCGH
13.5 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Bayesian additive regression trees (BART) for classification analysis of gene expression data
Bayesian
Regression
Bayesian
Regression
13.2 years ago
Santosh Patnaik
▴ 30
0
votes
0
replies
2.2k
views
Rgraphviz plot of bnlearn object with text too big
Network
Bayesian
Rgraphviz
Network
Bayesian
Rgraphviz
12.9 years ago
João Daniel Nunes Duarte
▴ 30
0
votes
0
replies
1.1k
views
Pathway specific gene lists in SPIA
Bayesian
Cancer
Bayesian
Cancer
12.8 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
1.3k
views
objective criterion for identification of outlying arrays by pca
Network
Bayesian
Cancer
Network
Bayesian
Cancer
12.5 years ago
shirley zhang
★ 1.0k
0
votes
0
replies
1.0k
views
nem package, nem.BN learning with 'continuous_Baysian' not possible
Network
Bayesian
nem
Network
Bayesian
nem
11.8 years ago
Siebourg Juliane
▴ 10
0
votes
0
replies
1.7k
views
Post Doctoral Openings at University of Pittsburgh
Bayesian
HIV
Bayesian
HIV
11.5 years ago
Porterfield, Toni
▴ 10
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.0 years ago
floriandeckert
▴ 30
0
votes
0
replies
868
views
Help baySeq
Bayesian
edgeR
Bayesian
edgeR
12.2 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
1.1k
views
BioC 2.0 is available
SNP
Microarray
Genetics
Annotation
Visualization
Bayesian
Survival
GUI
Cancer
adme16cod
17.0 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.6k
views
Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics
Bayesian
Cancer
Breast
Epigenetics
Bayesian
Cancer
Breast
16.3 years ago
Jean Yee Hwa Yang
▴ 130
0
votes
0
replies
1.0k
views
Limma script - Opinions requested
Annotation
Bayesian
limma
PROcess
Annotation
Bayesian
limma
PROcess
13.7 years ago
Orfe, Lisa
▴ 20
0
votes
0
replies
1.2k
views
Filtering out tags with low counts in DESeq and EgdeR?
Bayesian
limma
edgeR
DESeq
Bayesian
limma
edgeR
DESeq
12.9 years ago
Xiaohui Wu
▴ 280
0
votes
0
replies
1.4k
views
NUSE and RLE PLOTS for ST1.0 Gene chips with oligo w/o 1st quantile line
Bayesian
Cancer
oligo
Bayesian
Cancer
oligo
12.5 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
1.2k
views
Bioconductor 2.10 is released
Transcription
Sequencing
Microarray
Annotation
Normalization
Visualization
Network
Bayesian
12.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.0k
views
normalization and clustering etc...
Bayesian
Clustering
Leukemia
affy
PROcess
DOSE
Bayesian
Clustering
Leukemia
affy
PROcess
21.1 years ago
Phguardiol@aol.com
▴ 720
0
votes
0
replies
1.0k
views
Conference announcement: Compstat 2004
Visualization
Bayesian
Classification
Clustering
Regression
Visualization
Bayesian
20.5 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
841
views
Question about Microarray before/after treatment, Paired Analysis
Microarray
Bayesian
Microarray
Bayesian
20.0 years ago
Haiyan Wu
▴ 10
0
votes
0
replies
832
views
Replicates within array
Microarray
Normalization
Bayesian
Microarray
Normalization
Bayesian
19.8 years ago
Hua Weng
▴ 60
0
votes
0
replies
896
views
Nonorthogonal multiple comparisons in Limma/ Books on Bayesian Statistics
Bayesian
Cancer
limma
bridge
Bayesian
Cancer
limma
bridge
19.7 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
669
views
which library - identify gene expression markers using Bayesian
Bayesian
Bayesian
19.6 years ago
Liu, Xin
▴ 130
50 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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