Bioconductor Biseq

Showing : biseq • reset

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629

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BiSeq

2.2 years ago thomas.koefoed • 0

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745

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Biseq Methylation DMP DMR RRBS

3.8 years ago i.s.castanho • 0

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916

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bedgraph .cov wig biseq coverage

3.8 years ago akhaira • 0

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724

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BiSeq testClusters error dmr

3.8 years ago akhaira • 0

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921

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biseq beta regression

3.8 years ago akhaira • 0

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470

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Biseq

3.8 years ago akhaira • 0

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1.1k

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BiSeq DMR

updated 3.9 years ago by James W. MacDonald 65k • written 3.9 years ago by akhaira • 0

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571

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BiSeq Coldata

3.9 years ago akhaira • 0

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635

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biseq R methylation

4.0 years ago AishaD • 0

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603

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biseq betaRegression RRBS Methylation

4.1 years ago i.s.castanho • 0

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730

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BiSeq Wald test Beta regression

5.2 years ago mira • 0

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919

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biseq package installation r

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by lwh863 • 0

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900

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biseq ccle

5.7 years ago spr ▴ 10

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1.1k

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dna methylation biseq

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by ahmad.moousavi • 0

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1.1k

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biseq RRBS betaregression

7.1 years ago l.eijssen • 0

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1.3k

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biseq methylation dmr analysis

updated 7.3 years ago by Katja Hebestreit ▴ 130 • written 7.3 years ago by jjalmagro • 0

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1.9k

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biseq error trimClusters

updated 8.2 years ago by Katja Hebestreit ▴ 130 • written 8.3 years ago by kms68 • 0

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1.7k

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methylation linear model dmr bsseq biseq

8.4 years ago enricoferrero ▴ 660

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1.9k

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BiSeq readBismark

updated 8.5 years ago by James W. MacDonald 65k • written 8.5 years ago by Neel Aluru ▴ 460

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2.5k

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dmr methylation deseq2 bsseq biseq

updated 8.5 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.5 years ago by enricoferrero ▴ 660

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2.0k

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biseq RRBS SAAP-BS coverage

9.0 years ago maria.maqueda • 0

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3.0k

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biseq fdr data results

9.0 years ago • updated 8.9 years ago mnaymik ▴ 10

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1.7k

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BiSeq BiSeq

updated 10.2 years ago by David Iles ▴ 130 • written 10.2 years ago by Hans-Ulrich Klein ▴ 330

23 results • Page 1 of 1

Recent ...

Replies

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length