Showing : biseq • reset
2
votes
15
replies
3.1k
views
BiSeq trimClusters FDR.loc confusion
biseq fdr data results
9.1 years ago • updated 9.0 years ago mnaymik ▴ 10
2
votes
10
replies
1.2k
views
How do you use the readBismark command in BiSeq properly?
BiSeq DMR
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
2
votes
8
replies
944
views
Reason for NA in table after beta regression?
biseq beta regression
3.9 years ago akhaira • 0
0
votes
6
replies
1.9k
views
BiSeq trimClusters error
biseq error trimClusters
updated 8.3 years ago by ▴ 130 • written 8.4 years ago by • 0
0
votes
5
replies
2.0k
views
SAAP-BS data analysis (RRBS) - BiSeq use and Coverage Histogram
biseq RRBS SAAP-BS coverage
9.1 years ago • updated 9.0 years ago maria.maqueda • 0
4
votes
4
replies
1.9k
views
Unable to read data using readBismark in BiSeq
BiSeq readBismark
updated 8.5 years ago by 65k • written 8.5 years ago by ▴ 460
0
votes
3
replies
1.7k
views
BiSeq - readBismark error
BiSeq BiSeq
updated 10.3 years ago by ▴ 130 • written 10.3 years ago by ▴ 330
0
votes
3
replies
1.3k
views
BiSeq. Model beta regression on resampled data.
biseq methylation dmr analysis
updated 7.4 years ago by ▴ 130 • written 7.4 years ago by • 0
1
vote
2
replies
2.5k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 8.6 years ago by ★ 6.5k • written 8.6 years ago by ▴ 660
0
votes
1
reply
644
views
Variogram-sill larger than 1, and negative p.li values in trimClusters-output
BiSeq
2.3 years ago thomas.koefoed • 0
0
votes
1
reply
1.1k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
7.1 years ago l.eijssen • 0
0
votes
1
reply
1.1k
views
Problem in working with BiSeq - BSraw
dna methylation biseq
updated 6.4 years ago by 50k • written 6.4 years ago by • 0
0
votes
1
reply
953
views
Biseq installation error
biseq package installation r
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
1
reply
615
views
BiSeq - betaResults output only contains chr1 and chr2
biseq betaRegression RRBS Methylation
4.2 years ago i.s.castanho • 0
0
votes
1
reply
648
views
Are the ordering of outputs of methylation matrix and coordinates from predictedMeth() the same?
biseq R methylation
4.0 years ago AishaD • 0
0
votes
1
reply
737
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
3.9 years ago akhaira • 0
0
votes
1
reply
931
views
How to convert bedgraph.sorted or wig files to coverage files
bedgraph .cov wig biseq coverage
3.9 years ago • updated 3.8 years ago akhaira • 0
0
votes
0
replies
476
views
What values to include for predictedMethNull in BiSeq
Biseq
3.9 years ago akhaira • 0
0
votes
0
replies
916
views
BiSeq: Read in Relative Methylation data from CCLE
biseq ccle
5.8 years ago spr ▴ 10
0
votes
0
replies
756
views
Does it make sense to use Biseq for DMPs/DMCs in addition to DMRs?
Biseq Methylation DMP DMR RRBS
3.8 years ago i.s.castanho • 0
1
vote
0
replies
1.7k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
8.4 years ago enricoferrero ▴ 660
1
vote
0
replies
587
views
Understanding ColData in BiSeq
BiSeq Coldata
4.0 years ago akhaira • 0
0
votes
0
replies
743
views
Beta Regression model with wald test - BiSeq - which test is used?
BiSeq Wald test Beta regression
5.3 years ago mira • 0
23 results • Page 1 of 1
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Replies
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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