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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
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4.9 years ago Laurent Gatto 1.6k
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.9 years ago mnchoi67 ▴ 40
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
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6.9 years ago mnchoi67 ▴ 40
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BioC happening in 2018?
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7.4 years ago • updated 7.3 years ago s.munster ▴ 40
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
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7.9 years ago • updated 7.7 years ago Laurent Gatto 1.6k
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News: Workshop: microRNA Analysis Using Next-Generation Sequencing - From microRNA profiling and prediction to extensive downstream analyses
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8.5 years ago adele.feuerstein • 0
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News: Course: Analysis of RNA-seq and ChIP-seq data, March 29th - April 1st, Oeiras, Portugal
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8.8 years ago Mark Dunning ★ 1.1k
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News: Course: Statistics and Computing in Genome Data Science, July 10-15, 2016
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8.8 years ago Martin Morgan 25k
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News: Looking to attend to a Bioconductor course for biologists in Europe
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updated 9.6 years ago by ▴ 370 • written 9.6 years ago by ▴ 20
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News: 4 days left to register for a short course on computational proteomics
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9.8 years ago Olga Vitek ▴ 40
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News: Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
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9.8 years ago Martin Morgan 25k
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News: An introductory course to RNA-seq 17-19 March 2015
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9.8 years ago rcaloger ▴ 500
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News: Course announcement: CSAMA 2015 (13th ed.) Statistics and Computing in Genome Data Science
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9.9 years ago Wolfgang Huber ★ 13k
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News: Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
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10.2 years ago • updated 10.1 years ago Wolfgang Huber ★ 13k
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Comment: Normalizing batch effects using technical replicates for DGE analysis between tw by anna.cot.anna.cot ▴ 30
Thank you Gordon! Apologies if this is a too basic question-I'm a biologist and want to ensure I understand correctly. Here is my metadata …
Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20
I offer my apologies if the title was misleading. I will change it at once. I wrote txdb because the error emnated from `seqlevelsStyle(txd…
Comment: nightmare to make custom txdb for genomes from ToxoDB by rohitsatyam102 ▴ 20
Hi Herve As I mentioned, for parasites we rely on VEuPathDB databases (such as ToxoDB here: https://toxodb.org/toxo/app/downloads) which p…
Comment: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k
`keepStandardChromosomes()` is not smart enough to know what to keep for this assembly. Note that what `keepStandardChromosomes()` means by…
Comment: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k
Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…
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Answer: nightmare to make custom txdb for genomes from ToxoDB
Comment: nightmare to make custom txdb for genomes from ToxoDB
Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
Answer: nightmare to make custom txdb for genomes from ToxoDB
A: Advice on correcting for batch effect using DESeq2
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