Showing : crlmm • reset
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm vanillaice
10.7 years ago Shi, Tao ▴ 720
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How to make OPLS-DA variable importance plot
crlmm ropls Metabolomics
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
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1.5k
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crlmm with Illumina arrays
crlmm crlmm
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 480
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Error genotyping with CRLMM
crlmm copynumber illumina
updated 10.4 years ago by ▴ 370 • written 10.4 years ago by • 0
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2.1k
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crlmm Illumina SNP array genotyping
crlmm oligo
10.1 years ago vladhkim ▴ 10
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crlmm - Infinium iSelect HD Custom Genotyping
SNP beadarray crlmm SNP beadarray crlmm
updated 15.2 years ago by ▴ 1000 • written 15.2 years ago by ▴ 20
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(no subject)
crlmm crlmm
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 60
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Circumvent creating .ff files in the working directory when using genotype.Illumina() function
crlmm genotype.Illumina ff
updated 8.0 years ago by • 0 • written 9.6 years ago by ▴ 120
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1.9k
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CRLMM: the leading minor of order 1 is not positive definite
crlmm
9.6 years ago komal.rathi ▴ 120
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CRLMM warning message and null results
crlmm crlmm
updated 14.5 years ago by ★ 4.3k • written 14.5 years ago by ▴ 10
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Does CRLMM uses mismatched features?
SNP probe crlmm SNP probe crlmm
16.7 years ago mcoyne@boninc.com ▴ 50
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1.1k
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package to handle Infinium iSelect HD Custom Genotyping
SNP Normalization crlmm SNP Normalization crlmm
15.9 years ago Ramzi TEMANNI ▴ 160
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update of crlmm package in BioC 2.7
crlmm crlmm
15.3 years ago Rob Scharpf ▴ 250
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Illumina CanineHD CNV & crlmm?
GO cdf affy crlmm GO cdf affy crlmm
15.3 years ago Dykema, Karl ▴ 90
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Illumina CanineHD CNV & crlmm?
GO HapMap cdf affy crlmm GO HapMap cdf affy crlmm
15.2 years ago Matthew Ritchie ▴ 1000
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CRLMM calls to forward strand genotypes?
Annotation convert crlmm Annotation convert crlmm
15.2 years ago wrighth ▴ 260
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932
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Tumor and Normal samples copy number estimation with CRLMM
crlmm crlmm
14.8 years ago Sole Acha, Xavi ▴ 110
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1.4k
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Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation Cancer VanillaICE crlmm Annotation Cancer VanillaICE crlmm
14.4 years ago Daniel Rico ▴ 110
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Erros in crlmm Re: SNP 6 chip
SNP Sequencing affy oligo xps crlmm SNP Sequencing affy oligo xps crlmm
14.4 years ago Benilton Carvalho ★ 4.3k
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Normalized values in oligo::crlmm and oligo::snprma don't match?
SNP Normalization oligo crlmm SNP Normalization oligo crlmm
13.9 years ago Denise Mak ▴ 10
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NAs in snp.rhs.tests
SNP illuminaHumanv1 affy crlmm SNP illuminaHumanv1 affy crlmm
13.4 years ago maria traka IFR ▴ 30
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getting genotypes with oligo package
SNP oligo crlmm SNP oligo crlmm
12.7 years ago Guest User ★ 13k
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crlmm problem
SNP convert beadarray crlmm SNP convert beadarray crlmm
11.9 years ago Matthias Arnold ▴ 10
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crlmm of other software for oncoscan
Cancer crlmm Cancer crlmm
11.7 years ago Richard Friedman ▴ 80
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how to build a new crlmm CDF annotation package?
crlmm annotation
11.1 years ago Aaron Mackey ▴ 200
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Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm copy number
10.9 years ago kforner • 0
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crlmm: RFC - new feature to work on subsets of CEL files
crlmm
10.8 years ago Karl Forner ▴ 70
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crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray cdf crlmm
23 months ago mayra.haedo • 0
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genotype function from crlmm package creates next error "Error in quantile.default(M, c(1, 5)/6, names = FALSE) : missing values and NaN's not allowe…
software error crlmm genotype function
10.0 years ago IOM ▴ 20
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Recall genotypes from Illumina idat files using crlmm package
crlmm genotype
10.0 years ago nadne ▴ 10
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CRLMM: missing mitochondrial SNPs
crlmm genotype mitochondria
9.7 years ago nadne ▴ 10
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Illumina Genotyping in parallel raise an error
crlmm snp illumina
9.7 years ago nadne ▴ 10
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1.6k
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crlmm: Does it support Illumina BeadChip platform HumanCore-24v1-0_A
cnv cnvtools crlmm
9.6 years ago enriquev • 0
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verification
GO limma impute oligo makePlatformDesign crlmm GO limma impute oligo makePlatformDesign
19.0 years ago Vasiliki Xiarchou ▴ 10
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crlmm for new chip?
crlmm
8.9 years ago Scottt Hazelhurst • 0
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CRLMM for new arrays (Xgen)
crlmm array xgen
7.1 years ago smurali • 0
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crlmm package: issue with Infinium CytoSNP-850K v1.2 BeadChip platform
crlmm
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 10
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genotype from oncoscan
oncoscan genotype crlmm
6.8 years ago sanju • 0
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Question about using oligo and SNPchip for copy number analysis
SNP Cancer graph oligo SNPchip oligoClasses VanillaICE crlmm SNP Cancer graph oligo
16.8 years ago Min-Han Tan ▴ 40
89 results • Page 2 of 2
Recent ...
Replies
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k
As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…
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Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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