Showing : diffbind • reset
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50
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Difference in Contrast in DiffBind
DiffBind
6 days ago zzrammal • 0
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101
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
15 days ago Dinesh • 0
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0
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125
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dba.plotProfile() plotting and interpretation
DiffBind
18 days ago Henry ▴ 10
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97
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DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
19 days ago yvonneh • 0
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89
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How to create consensus peak sets for each group to use in DiffBind?
DiffBind
19 days ago Ian D. ▴ 70
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4
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381
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More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 10 days ago by • 0 • written 20 days ago by ▴ 70
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161
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Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 21 days ago by 42k • written 21 days ago by • 0
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1
reply
175
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ATACseq merge peaks
DiffBind
updated 25 days ago by ★ 4.1k • written 27 days ago by • 0
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4
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272
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Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
4 weeks ago lonn • 0
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109
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Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
5 weeks ago Virangika • 0
2
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2
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194
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[DiffBind] Obtaining normalization factors
DiffBind
5 weeks ago Henry ▴ 10
2
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2
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422
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[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
5 weeks ago Henry ▴ 10
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0
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127
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How to extract the coordinate of dba.plotPCA?
DiffBind PCA
7 weeks ago feather-W • 0
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126
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PCA plot for normalized counts using Diffbind
DiffBind PCAplot
7 weeks ago Ankit ▴ 20
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113
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DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
7 weeks ago Pierre Lindenbaum ▴ 10
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0
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153
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Multifactor analysis in DiffBind
DiffBind multifactoranalysis
8 weeks ago erbrocato • 0
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2
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282
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Scores used for DiffBind's dba.plotHeatmap
DiffBind
10 weeks ago • updated 9 weeks ago Sam ▴ 10
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1
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223
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Exact same results in Diffbind with different normalization methods
DiffBind
10 weeks ago • updated 9 weeks ago red_bricks ▴ 50
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1
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331
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Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
3 months ago isaromero8888 • 0
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0
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272
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
4 months ago Jawahar • 0
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0
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193
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Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
4 months ago frueher • 0
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0
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185
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
4 months ago Aswathy • 0
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0
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272
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Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
4 months ago Hai • 0
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0
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283
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ATACseq- Counts around TSS plot
DiffBind ATACSeq
4 months ago inna.gur • 0
1
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2
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353
views
Inconsistent results in DiffBind
DiffBind
5 months ago Sam ▴ 10
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2
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382
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In DiffBind, dba.blacklist changes the minOverlap parameter
DiffBind
written 5 months ago by ▴ 10
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1
reply
378
views
DiffBind getting Fold values of near 0
DiffBind DESeq2
updated 5 months ago by ★ 4.1k • written 5 months ago by • 0
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352
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
csaw ChIPseq DiffBind
6 months ago jared.andrews07 ▴ 30
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431
views
DiffBind dba.count() crash/can't finish problems
dba.count DiffBind ATACSeq
updated 7 months ago by 66k • written 7 months ago by • 0
2
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2
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490
views
DiffBind dba.analyze function doesn't have bSubControl option anymore?
DiffBind
7 months ago r.murakami • 0
2
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4
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1.3k
views
DiffBind returns different grey lists every time I run dba.blacklist even if I set seed.
DiffBind
updated 7 months ago by • 0 • written 7 months ago by • 0
1
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1
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479
views
DiffBind - how to prep the sample matrix when multiple bam files are used by MACS2's -t and -c param?
DiffBind chipseq
updated 7 months ago by 66k • written 7 months ago by • 0
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3
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661
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diffbind analyze for wheat
DiffBind
updated 11 weeks ago by • 0 • written 8 months ago by • 0
3
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7
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889
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 8 months ago by ▴ 10
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1
reply
573
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Samples have been merged or lost during counting. Check for duplicate bam files. DiffBind dbacount
DiffBind
8 months ago Mark • 0
0
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1
reply
959
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 4 months ago by • 0 • written 9 months ago by • 0
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2
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511
views
DiffBind error
DiffBind
updated 9 months ago by ★ 5.2k • written 9 months ago by • 0
1
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2
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660
views
DiffBind plot.profile y-axis unit and individual locus value on the heatmap
DiffBind
9 months ago Junsik • 0
0
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3
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683
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 10 months ago by ★ 5.2k • written 10 months ago by • 0
0
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2
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884
views
DiffBind dropping peaks in ATAC-seq data
DiffBind ATACSeq
updated 9 months ago by ★ 1.6k • written 10 months ago by • 0
0
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5
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3.3k
views
diffbind
DiffBind chipseq
updated 10 months ago by ★ 5.2k • written 10 months ago by • 0
1
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1
reply
2.4k
views
Question regarding lfcShrink types in DiffBind
FoldChange DiffBind lfcShrink
updated 10 months ago by ★ 5.2k • written 10 months ago by ▴ 20
1
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4
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912
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
10 months ago Theo ▴ 10
1
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2
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715
views
DiffBind Using edgeR: TMM Normalisation produces identical results to Library Size normalisation
DiffBind
updated 10 months ago by ★ 5.2k • written 10 months ago by • 0
1
vote
1
reply
2.0k
views
Help with error DiffBind
DiffBind
updated 9 months ago by ★ 5.2k • written 10 months ago by ▴ 10
2
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3
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656
views
Sample sheet file for DiffBind
DiffBind
updated 4 months ago by • 0 • written 11 months ago by ▴ 10
4
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4
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853
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange DiffBind lfcShrink Cut&TagData
11 months ago • updated 10 months ago bhandary.8590 ▴ 20
1
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2
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840
views
Interpret plots from DiffBind
DiffBind
11 months ago Chris ▴ 10
0
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1
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567
views
DiffBind output issues
DiffBind
updated 11 months ago by ★ 5.2k • written 11 months ago by • 0
0
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0
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446
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Help with error running DiffBind
DiffBind
11 months ago Chris ▴ 10
50 results • Page 1 of 1
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