Bioconductor Dna methylation

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1.6k

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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1.8k

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tcgabiolinks dna methylation

updated 6.4 years ago by Marcel Ramos 690 • written 6.4 years ago by michaelwxf2012 • 0

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1.8k

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normalization DNA methylation WGCNA

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by enora.fremy • 0

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976

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microarray HM450 dna methylation cohcap

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by poojitha.stemcell ▴ 10

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1.5k

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dna methylation illimina 450k methylation beta M significance

updated 6.6 years ago by James W. MacDonald 65k • written 6.6 years ago by skids121 • 0

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964

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medips medip-seq dna methylation dmr analysis

updated 5.4 years ago by Lukas Chavez ▴ 570 • written 5.4 years ago by mtefit • 0

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1.1k

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minfi normalization outliers dna methylation densityplot

5.8 years ago peter.fransquet • 0

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920

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minfi cell proportion estimateCellCounts DNA Methylation

4.1 years ago grayapply2009 • 0

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1.2k

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CNV minfi preprocessing dna methylation

7.1 years ago Thomas • 0

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1.1k

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dna methylation biseq

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by ahmad.moousavi • 0

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1.0k

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rnbeads methylation methylationepic dna methylation

6.2 years ago gabrielrfries • 0

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742

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differential variability dna methylation iEVORA DVP

6.0 years ago poojitha.stemcell ▴ 10

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1.1k

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minfi bumphunter DNA methylation illumina450k

updated 7.9 years ago by James W. MacDonald 65k • written 7.9 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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