Showing : dnaseq • reset
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Using DESeq2 for Analyzing AMR Gene Variations in Water Samples Post-Treatment
DESeq2 NanoporeRNASeq DNASeq
updated 12 weeks ago by 42k • written 12 weeks ago by • 0
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778
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Compare DNA sequence pairs and compute lengths and coordinates
DNASeq CNEr
2.9 years ago Md Abrar • 0
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4
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3.6k
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transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.2 years ago HELEN • 0
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868
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Job: Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq RNASeq SingleCell
3.3 years ago camp ▴ 10
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0
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745
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Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions Basic4Cseq DNASeq GenomicFiles
3.3 years ago koushik • 0
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1.1k
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Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops dnaseq bioinformatics
6.2 years ago Cased • 0
2
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3
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1.7k
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Doubt about WL in cn.mops
dnacopy dnaseq genomic cn.mops cnv
updated 6.4 years ago by ▴ 540 • written 6.4 years ago by • 0
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1
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1.2k
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How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq pathway analysis protein biomarkers
6.8 years ago emadelhewihy • 0
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1
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1.4k
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why merged paired end reads still have strand infomation?
dnaseq rtracklayer paired-end reads
7.4 years ago zwfanwz678 • 0
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1.2k
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Centipede foot printing export
footprinting centipede atac-seq dnaseq
7.6 years ago rbronste ▴ 60
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1.4k
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any ideas on a workflow for exome seq data analysis with R?
exome dnaseq WES
8.4 years ago arvand.akbari • 0
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2.0k
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Job: Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job jobs rnaseq chipseq dnaseq Job
9.1 years ago Rory Stark ★ 5.2k
3
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2
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1.5k
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Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings subsetting View dnastring dnaseq
updated 9.2 years ago by 67k • written 9.2 years ago by • 0
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1
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1.6k
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Newbie - Adding Labels to Individual Genes with ggbio?
r ggbio ggplot2 dnaseq genomicranges
updated 9.3 years ago by ▴ 130 • written 9.3 years ago by • 0
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9
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6.5k
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ChIPseq-style peak calling for paired-end sequencing?
Chipseq DNAseq ATAC bayespeak narrowpeaks
updated 9.5 years ago by 51k • written 9.5 years ago by ▴ 140
9
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8
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9.2k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2 dnaseq
updated 10.1 years ago by 42k • written 10.1 years ago by ▴ 100
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1.6k
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Bioconductor Employment: Statistical Research Associate
DNASeq Cancer DNASeq Cancer
12.9 years ago Martin Morgan 25k
17 results • Page 1 of 1
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Replies
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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