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dnaseq
•
reset
0
votes
0
replies
439
views
Compare DNA sequence pairs and compute lengths and coordinates
DNASeq
CNEr
17 months ago
Md Abrar
• 0
0
votes
4
replies
2.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq
rstudio
fasta
Biostrings
csv
21 months ago
HELEN
• 0
0
votes
0
replies
418
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
22 months ago
camp
• 0
0
votes
0
replies
365
views
Error in fragEnds[, 1] : incorrect number of dimensions while using printWigFile function in Basic4Cseq package
GenomicInteractions
Basic4Cseq
DNASeq
GenomicFiles
23 months ago
koushik
• 0
0
votes
0
replies
684
views
Doubt about the interpretation of cn.mops tumor vs normal results
cn.mops
dnaseq
bioinformatics
4.8 years ago
Cased
• 0
2
votes
3
replies
1.1k
views
Doubt about WL in cn.mops
dnacopy
dnaseq
genomic
cn.mops
cnv
updated 4.9 years ago by
Günter Klambauer
▴ 540 • written 4.9 years ago by
Cased
• 0
0
votes
1
reply
803
views
How to identify Disease biomarkers " DNA sequences as biomarkers "
dnaseq
pathway analysis
protein
biomarkers
5.3 years ago
emadelhewihy
• 0
0
votes
1
reply
891
views
why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
5.9 years ago
zwfanwz678
• 0
0
votes
0
replies
898
views
Centipede foot printing export
footprinting
centipede
atac-seq
dnaseq
6.2 years ago
rbronste
▴ 60
0
votes
0
replies
950
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
7.0 years ago
arvand.akbari
• 0
0
votes
0
replies
1.6k
views
Job:
Bioinformatics Analyst at University of Cambridge, Cancer Research UK Cambridge Institute
job
jobs
rnaseq
chipseq
dnaseq
Job
7.7 years ago
Rory Stark
★ 4.9k
3
votes
2
replies
1.1k
views
Get a complete view of a long DNA sequence of a Biostrings object in R
biostrings
subsetting
View
dnastring
dnaseq
updated 7.8 years ago by
James W. MacDonald
63k • written 7.8 years ago by
arado1
• 0
0
votes
1
reply
1.2k
views
Newbie - Adding Labels to Individual Genes with ggbio?
r
ggbio
ggplot2
dnaseq
genomicranges
updated 7.9 years ago by
arfranco
▴ 130 • written 7.9 years ago by
fathniz
• 0
8
votes
9
replies
5.3k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 8.0 years ago by
Gordon Smyth
47k • written 8.1 years ago by
samuel collombet
▴ 140
9
votes
8
replies
8.5k
views
DEseq2 extended to open chromatin anlaysis: normalization, dispersion fit, and "too many" differences
deseq2
dnaseq
updated 8.7 years ago by
Michael Love
40k • written 8.7 years ago by
hughes.drew
▴ 100
1
vote
0
replies
1.3k
views
Bioconductor Employment: Statistical Research Associate
DNASeq
Cancer
DNASeq
Cancer
11.5 years ago
Martin Morgan
25k
16 results • Page
1 of 1
Recent ...
Replies
Answer: multiple filters in biomaRt
by
RuBBiT0
▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected"
by
kyliecode
• 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio)
by
Michael Love
40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode
by
Habil Zare
▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file
by
jenniferbrowngates
• 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Votes
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Awards
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to
Tiago C. Silva
▴ 270
Popular Question
to
reba.duncan
• 0
Popular Question
to
tntntntntn
▴ 10
Popular Question
to
rodrigo.duarte88
▴ 30
Scholar
to
Rory Stark
★ 4.9k
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