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drimseq
•
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1
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977
views
DEXSeq DEXSeqDataSet count matrix duplication
DEXSeq
DRIMSeq
DEXSeqDataSet
columnduplication
2.2 years ago
NiKo
▴ 10
0
votes
0
replies
796
views
Estimating factors of unwanted variation for DTU analysis
RUVSeq
DRIMSeq
2.8 years ago
Luca
• 0
0
votes
3
replies
1.3k
views
DRIMseq error for paired sample analysis
DRIMSeq
2.8 years ago
Luca
• 0
2
votes
2
replies
1.2k
views
Inconsistent Dirichlet-multinominal coefficient and Beta-Binominal coefficient for a transcript in DTU analysis.
rnaseqDTU
DRIMSeq
3.5 years ago
wangziwei0010
▴ 10
0
votes
4
replies
2.7k
views
DEXSeq: samples$sample_id %in% colnames(counts) is not TRUE
DEXSeq
DRIMSeq
updated 3.7 years ago by
jeroen.gilis
▴ 100 • written 3.7 years ago by
phoebe1354
• 0
0
votes
5
replies
2.1k
views
DTU analysis with tximport-DRIM-Seq-DEXSeq-stageR workflow starting from StrinTie output
RNA-seq
DRIMSeq
DEXSeq
rnaseqDTU
4.4 years ago
bioinformatic_trainee
▴ 10
3
votes
4
replies
2.0k
views
DRIMSeq: many NAs in results compared to DESeq2 ?
DESeq2
DRIMSeq
dtu
RNASeq
4.5 years ago
sbcn
▴ 80
0
votes
0
replies
1.4k
views
Error generating counts df for use with DRIMSeq/DEXseq
DRIMSeq
DEXSeq
4.8 years ago
jbono
▴ 10
0
votes
2
replies
1.6k
views
DRIMSeq + dmFilter
DEXSeq
DRIMSeq
4.8 years ago
Gaia
• 0
0
votes
5
replies
2.2k
views
Error using DRIMSeq with Salmon count data
DRIMSeq
tximport
txdb
Salmon
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
Charlotte
• 0
1
vote
1
reply
1.4k
views
Error in dmTest() from DRIMSeq package - tuQTL
DRIMSeq
tuQTL
updated 5.5 years ago by
Gosia Nowicka
▴ 90 • written 5.5 years ago by
iaradsouza1
• 0
0
votes
5
replies
1.8k
views
DRIMSeq with technical replicates
DRIMSeq
R
DTU
technical replicates
deseq2
updated 5.5 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
poecile.pal
• 0
1
vote
1
reply
1.3k
views
DEXSeq-DTU normalisation suggestion - scaledTPM vs dtuScaledTPM
tximport
DEXSeq-DTU
DRIMSeq
updated 5.6 years ago by
Michael Love
43k • written 5.6 years ago by
aleksandar.baburski.g
• 0
0
votes
0
replies
1.1k
views
Subset samples expressing genes for DEXSeq or DRIMSeq analysis
DEXSeq
DRIMSeq
5.7 years ago
alexis.weinreb
• 0
0
votes
11
replies
2.3k
views
Issue during transcript variant analysis using rnaseqDTU-DRIMseq-DEXseq.
rnaseqDTU
DRIMseq
DEXseq
rna-seq
6.8 years ago
saddamhusain77
• 0
0
votes
1
reply
1.4k
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 6.9 years ago by
Koen Van den Berge
▴ 180 • written 6.9 years ago by
sdvie
• 0
1
vote
2
replies
2.1k
views
Normalized transcript/exon counts for network analysis
drimseq
dexseq
wgcna
sva
updated 6.9 years ago by
Gosia Nowicka
▴ 90 • written 6.9 years ago by
maya.kappil
▴ 30
0
votes
4
replies
2.1k
views
DRIMSeq continious variable in design matrix - Error during precision estimation
DRIMSeq
dmPrecision
updated 2.9 years ago by
Mary-Ellen
• 0 • written 7.0 years ago by
fiona.dick91
▴ 60
2
votes
4
replies
2.3k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
7.0 years ago
d-joester
▴ 20
2
votes
2
replies
1.6k
views
rnaseqDTU DTU workflow - pots-hoc Filter
DTU
DRIMSeq
rnaseqDTU
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
fiona.dick91
▴ 60
0
votes
3
replies
1.7k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
Jack.Hearn
• 0
1
vote
1
reply
1.2k
views
Calling a package specific function in a for loop
drimseq
swimming downstream
for loop
sapply
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
georgewwp
• 0
4
votes
3
replies
2.0k
views
DEXSeq and DRIMSeq on paired samples?
DRIMSeq
DEXSeq
updated 7.3 years ago by
Gosia Nowicka
▴ 90 • written 7.3 years ago by
zoe.ward
• 0
2
votes
9
replies
2.7k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 7.5 years ago by
Koen Van den Berge
▴ 180 • written 7.5 years ago by
fiona.dick91
▴ 60
1
vote
1
reply
1.7k
views
DrimSeq: installation versions
drimseq
DTU
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
somseeprags
▴ 10
1
vote
2
replies
2.1k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 9.0 years ago by
Gosia Nowicka
▴ 90 • written 9.0 years ago by
kristoffer.vittingseerup
▴ 20
26 results • Page
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Comment: limpa analysis advice
by
Gordon Smyth
53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice
by
SamGG
▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Comment: Pairwise comparison of multiple groups with different base
by
ja569116
• 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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