Bioconductor Expression

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2.6k

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expression R filtering limma

2.5 years ago • updated 2.3 years ago mohammedtoufiq91 ▴ 10

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657

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expression variancePartition edgeR

2.6 years ago Jonathan • 0

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1.4k

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microarray quantile expression R Normalization

updated 3.6 years ago by Konstantinos Yeles ▴ 80 • written 3.7 years ago by mohammedtoufiq91 ▴ 10

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1.5k

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GEO expression GEOquery

updated 4.9 years ago by Robert Castelo ★ 3.4k • written 4.9 years ago by lsbew • 0

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2.5k

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RATs RNA-Seq Isoforms DTU expression

updated 5.7 years ago by fruce_ki ▴ 20 • written 5.7 years ago by UserAnonyme • 0

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933

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deseq2 genes expression

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by UserAnonyme • 0

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4.1k

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rpkm scater calcaverage R expression

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by kushshah ▴ 10

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1.7k

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variance formula expression

updated 6.1 years ago by mikhael.manurung ▴ 280 • written 6.1 years ago by rina ▴ 30

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1.8k

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job sequencing methylation expression Job

10.1 years ago Andy Lynch ▴ 120

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2.1k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.2 years ago by Gordon Smyth 52k • written 10.2 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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Popular Question to Lluís Revilla Sancho ▴ 760