Showing : expression • reset
5
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Question on performing filtering by gene expression on a normalized matrix in limma?
expression R filtering limma
3.2 years ago • updated 3.0 years ago mohammedtoufiq91 ▴ 10
0
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0
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864
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Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
3.3 years ago Jonathan • 0
0
votes
1
reply
1.6k
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Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 4.4 years ago by ▴ 90 • written 4.4 years ago by ▴ 10
1
vote
1
reply
1.8k
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Table expression data from GEO file
GEO expression GEOquery
updated 5.6 years ago by ★ 3.4k • written 5.6 years ago by • 0
1
vote
9
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3.1k
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Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs RNA-Seq Isoforms DTU expression
updated 6.4 years ago by ▴ 20 • written 6.4 years ago by • 0
1
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2
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1.1k
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Two factors design with DESEq2
deseq2 genes expression
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
7
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3
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4.6k
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Log2(RPKM) counts in Bioconductor
rpkm scater calcaverage R expression
updated 6.6 years ago by ★ 29k • written 6.6 years ago by ▴ 10
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6
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2.0k
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variancePartition - testing for individuals
variance formula expression
updated 6.8 years ago by ▴ 280 • written 6.8 years ago by ▴ 30
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Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
10.8 years ago Andy Lynch ▴ 120
6
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5
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Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes expression affymetrix pd.hugene.2.0.st limma
updated 10.9 years ago by 53k • written 10.9 years ago by ▴ 200
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Comment: limpa - drivers for unusually high standard error? by Julia Broadbent • 0
Apologies for not being clearer in my initial question, but thank you for answering regardless! The large SE values I am looking at appear …
Answer: limpa - drivers for unusually high standard error? by Gordon Smyth 53k
Hi Julia, I am going to assume that you mean standard errors (SEs) returned by `dpcQuant()`, because later stages in the limpa pipeline do…
Comment: gene Set with high AUC score but no cells assigned to cell type by e.j.aaw.g.erm • 0
It sounds like AUCell is struggling with thresholding because your cDC2 gene set doesn t show a clear bimodal distribution. While a high AU…
Comment: featureCounts -L: high unassigned:mapq fraction by insurancetaaddddaxrealty • 0
FeatureCounts can behave differently with ONT cDNA BAM files due to long read splice patterns, and many users compare settings or presets m…
Comment: A problem occurs when running the monocle2 by e.j.aaw.g.erm • 0
For gamers facing technical issues or errors in complex scripts, the Redz Hub script download provides a reliable tool to optimize performa…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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