Bioconductor Expression

Showing : expression • reset

votes

replies

3.0k

views

expression R filtering limma

3.1 years ago • updated 2.9 years ago mohammedtoufiq91 ▴ 10

votes

replies

822

views

expression variancePartition edgeR

3.2 years ago Jonathan • 0

votes

1.6k

views

microarray quantile expression R Normalization

updated 4.3 years ago by Konstantinos Yeles ▴ 90 • written 4.3 years ago by mohammedtoufiq91 ▴ 10

vote

1.7k

views

GEO expression GEOquery

updated 5.5 years ago by Robert Castelo ★ 3.4k • written 5.5 years ago by lsbew • 0

vote

replies

3.1k

views

RATs RNA-Seq Isoforms DTU expression

updated 6.3 years ago by fruce_ki ▴ 20 • written 6.3 years ago by UserAnonyme • 0

vote

replies

1.1k

views

deseq2 genes expression

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by UserAnonyme • 0

votes

replies

4.6k

views

rpkm scater calcaverage R expression

updated 6.6 years ago by Aaron Lun ★ 29k • written 6.6 years ago by kushshah ▴ 10

votes

replies

1.9k

views

variance formula expression

updated 6.8 years ago by mikhael.manurung ▴ 280 • written 6.8 years ago by rina ▴ 30

votes

replies

1.9k

views

job sequencing methylation expression Job

10.7 years ago Andy Lynch ▴ 120

votes

replies

2.3k

views

ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.8 years ago by Gordon Smyth 53k • written 10.8 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

Recent ...

Replies

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

Votes

Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

Awards • All