Bioconductor Expression

Showing : expression • reset

votes

replies

3.1k

views

expression R filtering limma

3.2 years ago • updated 3.0 years ago mohammedtoufiq91 ▴ 10

votes

replies

884

views

expression variancePartition edgeR

3.3 years ago Jonathan • 0

votes

1.7k

views

microarray quantile expression R Normalization

updated 4.4 years ago by Konstantinos Yeles ▴ 90 • written 4.4 years ago by mohammedtoufiq91 ▴ 10

vote

1.8k

views

GEO expression GEOquery

updated 5.6 years ago by Robert Castelo ★ 3.4k • written 5.6 years ago by lsbew • 0

vote

replies

3.2k

views

RATs RNA-Seq Isoforms DTU expression

updated 6.4 years ago by fruce_ki ▴ 20 • written 6.4 years ago by UserAnonyme • 0

vote

replies

1.2k

views

deseq2 genes expression

updated 6.7 years ago by Michael Love 43k • written 6.7 years ago by UserAnonyme • 0

votes

replies

4.6k

views

rpkm scater calcaverage R expression

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by kushshah ▴ 10

votes

replies

2.0k

views

variance formula expression

updated 6.9 years ago by mikhael.manurung ▴ 280 • written 6.9 years ago by rina ▴ 30

votes

replies

2.0k

views

job sequencing methylation expression Job

10.9 years ago Andy Lynch ▴ 120

votes

replies

2.4k

views

ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.9 years ago by Gordon Smyth 53k • written 10.9 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

Recent ...

Replies

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Istvan Albert ▴ 50

Popular Question to Dario Strbenac ★ 1.6k

Scholar to Nikos Ignatiadis ▴ 180