Bioconductor Expression

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2.9k

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expression R filtering limma

3.0 years ago • updated 2.9 years ago mohammedtoufiq91 ▴ 10

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793

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expression variancePartition edgeR

3.2 years ago Jonathan • 0

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1.6k

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microarray quantile expression R Normalization

updated 4.2 years ago by Konstantinos Yeles ▴ 90 • written 4.2 years ago by mohammedtoufiq91 ▴ 10

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1.7k

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GEO expression GEOquery

updated 5.5 years ago by Robert Castelo ★ 3.4k • written 5.5 years ago by lsbew • 0

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3.0k

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RATs RNA-Seq Isoforms DTU expression

updated 6.3 years ago by fruce_ki ▴ 20 • written 6.3 years ago by UserAnonyme • 0

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1.1k

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deseq2 genes expression

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by UserAnonyme • 0

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4.5k

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rpkm scater calcaverage R expression

updated 6.5 years ago by Aaron Lun ★ 29k • written 6.5 years ago by kushshah ▴ 10

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1.9k

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variance formula expression

updated 6.7 years ago by mikhael.manurung ▴ 280 • written 6.7 years ago by rina ▴ 30

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1.9k

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job sequencing methylation expression Job

10.7 years ago Andy Lynch ▴ 120

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2.3k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 10.7 years ago by Gordon Smyth 53k • written 10.7 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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