Bioconductor Expression

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2.3k

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expression R filtering limma

2.1 years ago • updated 23 months ago mohammedtoufiq91 ▴ 10

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577

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expression variancePartition edgeR

2.2 years ago Jonathan • 0

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1.3k

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microarray quantile expression R Normalization

updated 3.3 years ago by Konstantinos Yeles ▴ 80 • written 3.3 years ago by mohammedtoufiq91 ▴ 10

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1.3k

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GEO expression GEOquery

updated 4.5 years ago by Robert Castelo ★ 3.4k • written 4.5 years ago by lsbew • 0

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2.2k

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RATs RNA-Seq Isoforms DTU expression

updated 5.3 years ago by fruce_ki ▴ 20 • written 5.3 years ago by UserAnonyme • 0

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856

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deseq2 genes expression

updated 5.6 years ago by Michael Love 42k • written 5.6 years ago by UserAnonyme • 0

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3.8k

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rpkm scater calcaverage R expression

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by kushshah ▴ 10

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1.6k

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variance formula expression

updated 5.8 years ago by mikhael.manurung ▴ 280 • written 5.8 years ago by rina ▴ 30

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1.7k

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job sequencing methylation expression Job

9.7 years ago Andy Lynch ▴ 120

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2.0k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 9.8 years ago by Gordon Smyth 51k • written 9.8 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k