Bioconductor Expression

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3.1k

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expression R filtering limma

3.3 years ago • updated 3.1 years ago mohammedtoufiq91 ▴ 10

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908

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expression variancePartition edgeR

3.4 years ago Jonathan • 0

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1.8k

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microarray quantile expression R Normalization

updated 4.5 years ago by Konstantinos Yeles ▴ 90 • written 4.5 years ago by mohammedtoufiq91 ▴ 10

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1.9k

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GEO expression GEOquery

updated 5.7 years ago by Robert Castelo ★ 3.4k • written 5.7 years ago by lsbew • 0

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3.3k

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RATs RNA-Seq Isoforms DTU expression

updated 6.5 years ago by fruce_ki ▴ 20 • written 6.5 years ago by UserAnonyme • 0

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1.2k

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deseq2 genes expression

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by UserAnonyme • 0

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4.7k

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rpkm scater calcaverage R expression

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by kushshah ▴ 10

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2.0k

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variance formula expression

updated 7.0 years ago by mikhael.manurung ▴ 280 • written 7.0 years ago by rina ▴ 30

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2.0k

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job sequencing methylation expression Job

10.9 years ago Andy Lynch ▴ 120

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2.4k

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 11.0 years ago by Gordon Smyth 53k • written 11.0 years ago by Paulo Nuin ▴ 200

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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k

Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…

Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k

The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…

Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0

Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…

Comment: Ensembl plants at annotationHub? by jwp48 • 0

Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!

Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k

Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…

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Answer: Incosistencies in buildSNNGraph() function

Answer: Where do the filename come from in the LOLA datasets?

Bioconductor Maintainer Application

A: What is logFC and "B" in methylation analysis ??

limma moderated t-statistics and B-statistics

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Popular Question to Lluís Revilla Sancho ▴ 760