Bioconductor Expression

Showing : expression • reset

votes

replies

3.1k

views

expression R filtering limma

3.4 years ago • updated 3.2 years ago mohammedtoufiq91 ▴ 10

votes

replies

946

views

expression variancePartition edgeR

3.5 years ago Jonathan • 0

votes

1.8k

views

microarray quantile expression R Normalization

updated 4.5 years ago by Konstantinos Yeles ▴ 90 • written 4.6 years ago by mohammedtoufiq91 ▴ 10

vote

1.9k

views

GEO expression GEOquery

updated 5.8 years ago by Robert Castelo ★ 3.4k • written 5.8 years ago by lsbew • 0

vote

replies

3.5k

views

RATs RNA-Seq Isoforms DTU expression

updated 6.6 years ago by fruce_ki ▴ 20 • written 6.6 years ago by UserAnonyme • 0

vote

replies

1.2k

views

deseq2 genes expression

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by UserAnonyme • 0

votes

replies

4.8k

views

rpkm scater calcaverage R expression

updated 6.8 years ago by Aaron Lun ★ 29k • written 6.8 years ago by kushshah ▴ 10

votes

replies

2.0k

views

variance formula expression

updated 7.0 years ago by mikhael.manurung ▴ 280 • written 7.0 years ago by rina ▴ 30

votes

replies

2.0k

views

job sequencing methylation expression Job

11.0 years ago Andy Lynch ▴ 120

votes

replies

2.4k

views

ebayes expression affymetrix pd.hugene.2.0.st limma

updated 11.1 years ago by Gordon Smyth 53k • written 11.1 years ago by Paulo Nuin ▴ 200

10 results • Page 1 of 1

Recent ...

Replies

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

Awards • All

Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k