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Showing :
expression
•
reset
5
votes
8
replies
3.0k
views
Question on performing filtering by gene expression on a normalized matrix in limma?
expression
R
filtering
limma
3.1 years ago • updated 2.9 years ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
822
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
3.2 years ago
Jonathan
• 0
0
votes
1
reply
1.6k
views
Re-normalize microarray dataset in R
microarray
quantile
expression
R
Normalization
updated 4.3 years ago by
Konstantinos Yeles
▴ 90 • written 4.3 years ago by
mohammedtoufiq91
▴ 10
1
vote
1
reply
1.7k
views
Table expression data from GEO file
GEO
expression
GEOquery
updated 5.5 years ago by
Robert Castelo
★ 3.4k • written 5.5 years ago by
lsbew
• 0
1
vote
9
replies
3.1k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 6.3 years ago by
fruce_ki
▴ 20 • written 6.3 years ago by
UserAnonyme
• 0
1
vote
2
replies
1.1k
views
Two factors design with DESEq2
deseq2
genes
expression
updated 6.6 years ago by
Michael Love
43k • written 6.6 years ago by
UserAnonyme
• 0
7
votes
3
replies
4.6k
views
Log2(RPKM) counts in Bioconductor
rpkm
scater
calcaverage
R
expression
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
kushshah
▴ 10
0
votes
6
replies
1.9k
views
variancePartition - testing for individuals
variance
formula
expression
updated 6.8 years ago by
mikhael.manurung
▴ 280 • written 6.8 years ago by
rina
▴ 30
0
votes
0
replies
1.9k
views
Job:
Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job
sequencing
methylation
expression
Job
10.7 years ago
Andy Lynch
▴ 120
6
votes
5
replies
2.3k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 10.8 years ago by
Gordon Smyth
53k • written 10.8 years ago by
Paulo Nuin
▴ 200
10 results • Page
1 of 1
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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★ 1.3k
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