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Showing :
expression
•
reset
5
votes
8
replies
1.9k
views
Question on performing filtering by gene expression on a normalized matrix in limma?
expression
R
filtering
limma
19 months ago • updated 17 months ago
mohammedtoufiq91
▴ 10
0
votes
0
replies
451
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
20 months ago
Jonathan
• 0
0
votes
1
reply
1.2k
views
Re-normalize microarray dataset in R
microarray
quantile
expression
R
Normalization
updated 2.8 years ago by
Konstantinos Yeles
▴ 80 • written 2.8 years ago by
mohammedtoufiq91
▴ 10
1
vote
1
reply
1.1k
views
Table expression data from GEO file
GEO
expression
GEOquery
updated 4.0 years ago by
Robert Castelo
★ 3.3k • written 4.0 years ago by
lsbew
• 0
1
vote
9
replies
1.9k
views
Difference between gene-level test and transcript-level test with RATs (Relative Abundance of Transcrits)
RATs
RNA-Seq
Isoforms
DTU
expression
updated 4.8 years ago by
fruce_ki
▴ 20 • written 4.8 years ago by
UserAnonyme
• 0
1
vote
2
replies
701
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
UserAnonyme
• 0
7
votes
3
replies
3.3k
views
Log2(RPKM) counts in Bioconductor
rpkm
scater
calcaverage
R
expression
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
kushshah
▴ 10
0
votes
6
replies
1.3k
views
variancePartition - testing for individuals
variance
formula
expression
updated 5.3 years ago by
mikhael.manurung
▴ 270 • written 5.3 years ago by
rina
▴ 30
0
votes
0
replies
1.6k
views
Job:
Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job
sequencing
methylation
expression
Job
9.2 years ago
Andy Lynch
▴ 120
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Paulo Nuin
▴ 200
10 results • Page
1 of 1
Recent ...
Replies
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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★ 4.1k
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Ben
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