Showing : geneplotter • reset
6
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Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
0
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1
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1.1k
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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4
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1.7k
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[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ★ 6.5k
0
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2
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1.2k
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AnnBuilder questions
Annotation GO Yeast hgu95av2 probe geneplotter AnnBuilder Annotation GO Yeast hgu95av2
updated 16.7 years ago by ★ 7.2k • written 16.7 years ago by ▴ 30
0
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0
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1.7k
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how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.7 years ago Min Wook Kim ▴ 20
0
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4
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2.1k
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disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.7 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
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2
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1.2k
views
Rgraphviz edge attributes can't be changed on Mac
Biobase geneplotter Rgraphviz Biobase geneplotter Rgraphviz
updated 16.5 years ago by ▴ 540 • written 16.5 years ago by ★ 1.6k
0
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0
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952
views
Colors in cColor from geneplotter
probe geneplotter probe geneplotter
15.9 years ago Heidi Dvinge ★ 2.0k
0
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1
reply
1.3k
views
bug info
Microarray Normalization geneplotter graph limma Microarray Normalization geneplotter
updated 12.9 years ago by 6.7k • written 12.9 years ago by ▴ 10
0
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0
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1.5k
views
peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.2k
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Bioconductor 1.0
Microarray Annotation Normalization Cancer genefilter geneplotter multtest ROC Microarray
22.0 years ago Anthony Rossini ▴ 530
0
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0
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904
views
Re: Bioconductor digest, Vol 1 #41 - 4 msgs
geneplotter multtest geneplotter multtest
22.0 years ago HYing ▴ 20
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0
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714
views
Problem with datasets (was: Re: Bioconductor digest, Vol 1 #41 - 4 msgs)
geneplotter multtest geneplotter multtest
22.0 years ago Laurent Gautier ★ 2.3k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
0
votes
5
replies
1.1k
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
21.3 years ago • updated 21.2 years ago madman@jimmy.harvard.edu ▴ 850
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3
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1.2k
views
contributing to Bioconductor
GO Clustering geneplotter GO Clustering geneplotter
21.2 years ago Wilkinson, Mark ▴ 60
0
votes
1
reply
868
views
[bioC] GenePlotter for mgu74v2
GO Cancer mgu74a mgu74av2 geneplotter GO Cancer mgu74a mgu74av2 geneplotter
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ★ 2.9k
0
votes
1
reply
812
views
using geneplotter with my own data
geneplotter geneplotter
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 80
0
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1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
0
votes
1
reply
774
views
Help using annotation data without explicitly building data package
Annotation geneplotter Annotation geneplotter
updated 20.5 years ago by 6.7k • written 20.5 years ago by 21k
0
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0
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519
views
Suggestion to geneplotter vignette
Annotation geneplotter Annotation geneplotter
20.1 years ago Palle Villesen ▴ 10
0
votes
0
replies
736
views
geneplotter and base position
Annotation geneplotter affy Annotation geneplotter affy
20.0 years ago david neil hayes ▴ 70
0
votes
1
reply
864
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 500
0
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0
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1.0k
views
Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
0
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0
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1.1k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
0
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2
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1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
2
replies
1.7k
views
Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.5 years ago by ▴ 680 • written 19.5 years ago by ▴ 10
0
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0
replies
817
views
Affy: chromosomal localization with expression value for of gene lists
Cancer geneplotter Cancer geneplotter
19.2 years ago John Zhang ★ 2.9k
0
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2
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879
views
greenred.colors() in geneplotter
geneplotter geneplotter
19.2 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
1.4k
views
Geneplotter, alongChrom problem
Organism geneplotter Organism geneplotter
updated 19.1 years ago by ★ 13k • written 19.1 years ago by ▴ 540
0
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0
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
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1
reply
941
views
Defining your own chromosome annotations
geneplotter genomes geneplotter genomes
updated 19.0 years ago by 21k • written 19.0 years ago by ▴ 30
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0
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1.3k
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Re: Defining your own chromosome annotations
Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder
19.0 years ago Palmer, Lance ▴ 30
0
votes
12
replies
1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
0
votes
10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
votes
1
reply
964
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
votes
1
reply
823
views
Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ★ 1.3k
0
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0
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1.6k
views
Options for spatial normalization? (Oliver Homann)
SNP Microarray Annotation Normalization GO Classification Cancer annotate geneplotter SNP
17.2 years ago Tarca, Adi ▴ 570
0
votes
1
reply
1.4k
views
question about limma2annaffy
GO Survival Biobase annotate genefilter geneplotter affy affydata graph limma annaffy
updated 17.1 years ago by 65k • written 17.1 years ago by ★ 2.2k
0
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2
replies
1.6k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 17.1 years ago by 50k • written 17.1 years ago by ▴ 680
0
votes
0
replies
1.2k
views
RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
17.1 years ago stephen edwards ▴ 10
0
votes
4
replies
2.2k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 16.9 years ago by ★ 1.9k • written 16.9 years ago by ▴ 250
0
votes
3
replies
1.2k
views
chromosome plot
zebrafish geneplotter zebrafish geneplotter
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 160
0
votes
1
reply
1.2k
views
beadarray readIllumina suggestions
Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy
updated 16.9 years ago by ▴ 460 • written 16.9 years ago by ▴ 10
0
votes
1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
0
votes
3
replies
1.6k
views
beadarray package: problem with bead level data
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 270
0
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1
reply
1.4k
views
ControlID Qcinfo slot in Illumina beadarray summary data?
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 410
0
votes
1
reply
1.2k
views
beadarray - combing
geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio
updated 16.7 years ago by ▴ 320 • written 16.7 years ago by ▴ 270
0
votes
6
replies
3.4k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 16.7 years ago by ▴ 220 • written 16.7 years ago by ★ 2.2k
50 results • Page 1 of 1
Recent ...
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Votes
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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