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ggtree
•
reset
0
votes
0
replies
116
views
ggtree tip label position (depth)
ggtree
4 weeks ago
Roope
• 0
1
vote
4
replies
3.5k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 9 months ago by
xushuangbin
• 0 • written 9 months ago by
Hank
• 0
0
votes
3
replies
727
views
Annotated dendogram (tree) from tbl_graph
dendogram
ggtreeExtra
ggtree
annotation
Annotation
13 months ago
christian.dina
• 0
0
votes
0
replies
431
views
Using a clustree object to draw a "classical" dendogram
ggplot
dendogram
ggtreeExtra
clustree
ggtree
13 months ago
christian.dina
• 0
2
votes
1
reply
593
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 13 months ago by
shepherl
3.9k • written 13 months ago by
John
▴ 10
0
votes
1
reply
1.4k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 20 months ago by
shepherl
3.9k • written 20 months ago by
Muhammad Isa
• 0
2
votes
3
replies
8.6k
views
ggtree install
ggtree
rvcheck
updated 2.6 years ago by
Brock
• 0 • written 2.6 years ago by
bjarke
▴ 10
0
votes
0
replies
1.0k
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage
ggtree
2.9 years ago
moria.robinson
• 0
0
votes
0
replies
748
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio
EPA
jplace
RAxML
ggtree
3.1 years ago
Vincent
• 0
3
votes
3
replies
1.1k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r
ggtree
phylogeny
updated 3.8 years ago by
Guangchuang Yu
★ 1.2k • written 3.8 years ago by
sd.gamboa.t
▴ 10
6
votes
2
replies
4.2k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 4.3 years ago by
saladi
• 0 • written 8.0 years ago by
map2085
▴ 40
0
votes
1
reply
1.4k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 5.0 years ago by
Guangchuang Yu
★ 1.2k • written 5.2 years ago by
alisa.postma
• 0
0
votes
1
reply
1.7k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree
treeio
5.8 years ago
jdimopoulos21
• 0
2
votes
2
replies
1.5k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.1 years ago by
markus.riester
▴ 130 • written 6.1 years ago by
martin
• 0
0
votes
1
reply
1.6k
views
tip_glom and annotations?
ggtree
treeio
phyloseq
annotation
tip_glom
updated 6.3 years ago by
Guangchuang Yu
★ 1.2k • written 6.3 years ago by
werdnus
• 0
0
votes
3
replies
3.4k
views
Unable to reroot RAxML tree with ggtree
ggtree
raxml
reroot
tree
6.3 years ago
kevin.liam.keegan
• 0
0
votes
1
reply
1.9k
views
ggtree: time-scaled tree s
phylogenetic
ggtree
calibration
fossils
times-scale
updated 6.7 years ago by
Guangchuang Yu
★ 1.2k • written 6.7 years ago by
aelgorriaga
• 0
1
vote
2
replies
1.7k
views
EBImage cannot read .png images from Image.R
ebimage
ggtree
updated 6.9 years ago by
Andrzej Oleś
▴ 750 • written 6.9 years ago by
benauxier
• 0
2
votes
3
replies
5.3k
views
Error during EBImage installation
ebimage
ggtree
package installation
updated 7.0 years ago by
Andrzej Oleś
▴ 750 • written 7.0 years ago by
slagter.maarten
▴ 10
0
votes
1
reply
2.0k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree
ggplot2
phyloseq
geom_boxplot
facet_plot
updated 7.2 years ago by
Guangchuang Yu
★ 1.2k • written 7.2 years ago by
matthew.wipperman
• 0
2
votes
7
replies
2.3k
views
Visualize lineage tree using ggtree
ggtree
lineage
7.8 years ago • updated 7.7 years ago
yun YAN
▴ 20
0
votes
1
reply
1.5k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 7.7 years ago by
Guangchuang Yu
★ 1.2k • written 7.7 years ago by
723388
• 0
2
votes
0
replies
1.2k
views
News:
ggtree published in MEE
ggtree
News
7.7 years ago
Guangchuang Yu
★ 1.2k
0
votes
1
reply
2.1k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
david.wyllie
• 0
5
votes
3
replies
12k
views
ggtree - trouble displaying longer label names
ggtree
updated 8.6 years ago by
Guangchuang Yu
★ 1.2k • written 8.6 years ago by
Alan Smith
▴ 150
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.2 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
26 results • Page
1 of 1
Recent ...
Replies
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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