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Showing :
gotools
•
reset
0
votes
3
replies
4.8k
views
how to get gene list for given GO terms?
Pathways
GO
Cancer
PROcess
goTools
genomes
Pathways
GO
Cancer
PROcess
goTools
genomes
updated 22 months ago by
pengmin.wang.1
• 0 • written 12.2 years ago by
Marc Carlson
★ 7.2k
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO
hgu133plus2
annotate
geneplotter
graph
Rgraphviz
PROcess
goTools
biomaRt
Category
GO
updated 16.6 years ago by
Steffen
▴ 500 • written 16.7 years ago by
Dick Beyer
★ 1.4k
0
votes
12
replies
2.0k
views
Quick start to linking GO terms and microarray data
Microarray
GO
affy
PROcess
goTools
GOstats
Microarray
GO
affy
PROcess
goTools
GOstats
18.2 years ago
michael watson IAH-C
★ 3.4k
0
votes
2
replies
1.9k
views
help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 13.6 years ago by
Michael Dondrup
▴ 550 • written 13.6 years ago by
Veerendra GP
▴ 100
0
votes
9
replies
1.8k
views
ontoCompare (goTools) : goidvect error
GO
goTools
GO
goTools
12.7 years ago
Oana VIGY
▴ 80
0
votes
2
replies
1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription
Microarray
Annotation
GO
goTools
Transcription
Microarray
Annotation
GO
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Guest User
★ 13k
0
votes
4
replies
1.4k
views
error with ontoCompare (goTools)
GO
hgu133a
graph
goTools
GO
hgu133a
graph
goTools
updated 15.3 years ago by
Alex Sanchez
▴ 90 • written 15.3 years ago by
Wolfgang Raffelsberger
▴ 160
0
votes
1
reply
1.3k
views
GOtools: argument is of length zero
goTools
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
3
replies
1.3k
views
GO terms not found in goTools and GO
GO
Biobase
annotate
goTools
biomaRt
GO
Biobase
annotate
goTools
biomaRt
updated 16.8 years ago by
Seth Falcon
★ 7.4k • written 16.8 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
2
replies
1.2k
views
using GSEAlm with GO geneSetCollections
GO
affy
goTools
Category
GSEABase
GSEAlm
GO
affy
goTools
Category
GSEABase
GSEAlm
updated 15.5 years ago by
Dykema, Karl
▴ 90 • written 15.5 years ago by
Mark W Kimpel
▴ 830
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation
GO
ath1121501
goTools
GOstats
biomaRt
Annotation
GO
ath1121501
goTools
updated 17.7 years ago by
Nianhua Li
▴ 870 • written 17.7 years ago by
Ann Hess
▴ 340
0
votes
1
reply
1.2k
views
(no subject)
Pathways
Clustering
goTools
GOstats
Pathways
Clustering
goTools
GOstats
updated 14.8 years ago by
anupam sinha
▴ 270 • written 14.8 years ago by
McGee, Monnie
▴ 300
0
votes
2
replies
1.1k
views
goTools and plot and go group names
GO
graph
goTools
GO
graph
goTools
updated 19.7 years ago by
Paquet, Agnes
▴ 500 • written 19.7 years ago by
Dr Gyorffy Balazs
▴ 320
0
votes
1
reply
1.1k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.9 years ago by
Jean-Pierre Desvignes
▴ 60 • written 14.9 years ago by
Scott Markel
▴ 50
0
votes
1
reply
1.0k
views
goTools problem
goTools
oligo
goTools
oligo
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Jorrit Boekel
▴ 30
0
votes
0
replies
1.0k
views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray
GO
graph
goTools
Category
oligo
Microarray
GO
graph
goTools
Category
oligo
17.0 years ago
Paquet, Agnes
▴ 500
0
votes
2
replies
1.0k
views
GO Tools
GO
goTools
GO
goTools
19.0 years ago
Paquet, Agnes
▴ 500
0
votes
1
reply
1.0k
views
Arabidopsis GO Pie Charts
goTools
Category
goTools
Category
16.5 years ago
Naomi Altman
★ 6.0k
0
votes
1
reply
1.0k
views
question about ontoCompare() performance change
Transcription
GO
hgu133a
goTools
Transcription
GO
hgu133a
goTools
updated 14.5 years ago by
Seth Falcon
★ 7.4k • written 14.5 years ago by
Scott Markel
▴ 50
0
votes
0
replies
966
views
obtaining GOID from nuID
GO
goTools
lumi
GO
goTools
lumi
14.3 years ago
Md.Mamunur Rashid
▴ 260
0
votes
0
replies
917
views
question about the value retured by function ontoCompare()
GO
hgu133a
probe
PROcess
goTools
oligo
GO
hgu133a
probe
PROcess
goTools
oligo
17.2 years ago
Paquet, Agnes
▴ 500
0
votes
1
reply
890
views
annotation packages and goTools
Annotation
moe430a
moe430b
goTools
Annotation
moe430a
moe430b
goTools
updated 19.2 years ago by
John Zhang
★ 2.9k • written 19.2 years ago by
Straubhaar, Juerg
▴ 300
0
votes
1
reply
885
views
Reporting results of HyperGTest
GO
goTools
GO
goTools
updated 16.1 years ago by
Pankaj Chopra
▴ 20 • written 16.1 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
880
views
GO Tools
goTools
goTools
19.0 years ago
Mayte Suarez-Farinas
▴ 300
0
votes
1
reply
864
views
problems with library goCluster
GO
goTools
GOstats
goCluster
GO
goTools
GOstats
goCluster
updated 17.3 years ago by
James W. MacDonald
65k • written 17.3 years ago by
Caroline Reiff
▴ 40
0
votes
1
reply
858
views
Using ontoCompare with local GO database
GO
goTools
GO
goTools
updated 17.3 years ago by
Paquet, Agnes
▴ 500 • written 17.3 years ago by
Alessandro Bruselles
▴ 100
0
votes
0
replies
850
views
goTools question
probe
goTools
probe
goTools
13.6 years ago
Pete Shepard
▴ 240
0
votes
0
replies
776
views
goTools package - extract genes
GO
probe
goTools
GO
probe
goTools
15.9 years ago
Anne Dirks Højfeldt / Region Nordjylland
▴ 10
0
votes
0
replies
753
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE
hypeR
goTools
GOstats
topGO
3.4 years ago
Madza Farias-Virgens
• 0
0
votes
0
replies
741
views
question about ontoCompare() performance change
GO
PROcess
goTools
GO
PROcess
goTools
14.8 years ago
Oana VIGY
▴ 80
2
votes
5
replies
144
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 19 hours ago by
James W. MacDonald
65k • written 2 days ago by
bandconductor
• 0
31 results • Page
1 of 1
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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