Showing : heatmap.2 • reset
1
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505
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 12 months ago by ▴ 80 • written 13 months ago by ▴ 10
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1
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687
views
collided row names in heatmap.2
heatmap.2 genefilter deseq2
updated 2.7 years ago by 65k • written 2.7 years ago by • 0
2
votes
2
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3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
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791
views
RPKM representation in heatmap is not accurate
heatmap.2 z-score
updated 5.8 years ago by ★ 28k • written 5.8 years ago by • 0
5
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3
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12k
views
Interpreting heatmap in DESEQ2
deseq2 heatmap.2
updated 6.1 years ago by ▴ 150 • written 6.1 years ago by • 0
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0
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1.6k
views
Sub clustering from hierarchical cluster used to make heat map of gene expression data
heatmap.2 hierarchical clustering microarray RNA seq DEG
6.2 years ago lawarde.ankita1 ▴ 30
4
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8
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7.9k
views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2 heatmap.2 bicluster pheatmap
updated 6.5 years ago by 41k • written 8.6 years ago by ▴ 10
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2
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1.2k
views
gene names disapper from heatmap.2 after adding gene descripton
heatmap.2 edger
6.5 years ago mictadlo ▴ 10
0
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4
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6.4k
views
Sample-to-sample distance matrix using heatmap.2
heatmap.2 gplots DESeq2
6.6 years ago Jane Merlevede ▴ 90
8
votes
1
reply
9.2k
views
extracting the genes associated with the clusters
heatmap.2 pheatmap complexheatmap heatplus
updated 7.1 years ago by ▴ 680 • written 7.1 years ago by ▴ 670
0
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1
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1.7k
views
heatmap.2 reorder branches
heatmap.2 hclust reorderfun
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 360
2
votes
1
reply
3.5k
views
Assign custom dendrogram to ComplexHeatmap Heatmap object
complexheatmap heatmap.2 dendrogram dendextend heatmap
updated 7.5 years ago by ▴ 200 • written 7.5 years ago by ▴ 660
1
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3
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2.2k
views
How to combine replicates creating heatmap?
deseq2 edgeR heatmap.2
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 50
1
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5
replies
4.2k
views
Heatmaps with replicates or triplicate data sets with counts to EdgeR, DESeq, or DESeq2
heatmap.2 heatmap edgeR deseq2 deseq
updated 8.0 years ago by 41k • written 8.0 years ago by ▴ 10
1
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1
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1.6k
views
heatmap2 error key
heatmap.2
updated 8.0 years ago by 65k • written 8.0 years ago by ▴ 90
1
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2
replies
2.5k
views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap heatmap.2
8.1 years ago John ▴ 30
1
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0
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2.6k
views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2 pheatmap
8.6 years ago AJC ▴ 10
0
votes
0
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2.6k
views
Problem with the colors in the heatmap.2 function and the color key values range
gplots heatmap.2 affymetrix microarrays color key
8.6 years ago svlachavas ▴ 830
1
vote
2
replies
10k
views
Use of various distance measures and clustering methods in heatmap creation
gplots heatmap.2 bioconductor pearsoncorrelation average
8.8 years ago svlachavas ▴ 830
0
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2
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1.4k
views
Possible construction of heatmap for clustering only genes for different treatments and not samples
heatmap.2 clustering common DEG genes bioconductor
updated 8.8 years ago by 65k • written 8.8 years ago by ▴ 830
0
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1
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1.5k
views
Error when trying to plot sample distance from and assay object generated with DESeq2
deseq2 heatmap.2
updated 8.9 years ago by 41k • written 8.9 years ago by ▴ 30
0
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7
replies
4.9k
views
Visualization of rownames in the heatmap.2 function for selected DE genes of a microarray dataset
heatmap.2 gplots differential gene expression visualization
9.1 years ago svlachavas ▴ 830
22 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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