Bioconductor Hg38

Showing : hg38 • reset

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510

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SeqSQC hg38

updated 13 months ago by James W. MacDonald 67k • written 13 months ago by isml2688 • 0

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882

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hg38 genicannotations

updated 3.1 years ago by James W. MacDonald 67k • written 3.1 years ago by bundo • 0

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1.3k

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Annotation variation HG38

updated 4.0 years ago by James W. MacDonald 67k • written 4.0 years ago by Emanuele • 0

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1.2k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 4.7 years ago by kayla.interdonato ▴ 160 • written 4.7 years ago by jam526 • 0

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2.7k

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edaseq normalization hg38 biomart org.db

updated 6.9 years ago by davide risso ▴ 980 • written 6.9 years ago by mark.ebbert • 0

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1.7k

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featurecounts hg38

7.5 years ago raf4 ▴ 30

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2.9k

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salmon hg38 tximport tx2gene.csv

updated 7.7 years ago by Michael Love 42k • written 7.7 years ago by seb.boegel • 0

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2.4k

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rsubread ncbi GRCh38 hg38

updated 8.0 years ago by Wei Shi ★ 3.6k • written 8.0 years ago by jan.soderman • 0

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2.3k

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bsgenome hg38 r version 3.1.2

updated 9.2 years ago by James W. MacDonald 67k • written 9.2 years ago by kylvalda • 0

9 results • Page 1 of 1

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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