Bioconductor Hg38

Showing : hg38 • reset

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549

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SeqSQC hg38

updated 16 months ago by James W. MacDonald 67k • written 16 months ago by isml2688 • 0

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975

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hg38 genicannotations

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by bundo • 0

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1.4k

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Annotation variation HG38

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by Emanuele • 0

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1.3k

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 5.0 years ago by kayla.interdonato ▴ 160 • written 5.0 years ago by jam526 • 0

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2.8k

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edaseq normalization hg38 biomart org.db

updated 7.2 years ago by davide risso ▴ 980 • written 7.2 years ago by mark.ebbert • 0

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1.8k

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featurecounts hg38

7.7 years ago raf4 ▴ 30

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3.0k

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salmon hg38 tximport tx2gene.csv

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by seb.boegel • 0

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2.5k

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rsubread ncbi GRCh38 hg38

updated 8.3 years ago by Wei Shi ★ 3.6k • written 8.3 years ago by jan.soderman • 0

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2.4k

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bsgenome hg38 r version 3.1.2

updated 9.4 years ago by James W. MacDonald 67k • written 9.4 years ago by kylvalda • 0

9 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

Votes

Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

Awards • All

Teacher to Axel Klenk ★ 1.1k