Showing : hg38 • reset
0
votes
1
reply
538
views
Is SeqSQC compatible with hg38?
SeqSQC hg38
updated 14 months ago by 67k • written 14 months ago by • 0
0
votes
1
reply
942
views
Genic annotations of whole hg38
hg38 genicannotations
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
6
votes
3
replies
1.4k
views
Annotating all SNVs in a genomic area, based on HG38 coordinates
Annotation variation HG38
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
2
votes
4
replies
1.2k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 4.9 years ago by ▴ 160 • written 4.9 years ago by • 0
2
votes
5
replies
2.8k
views
getGeneLengthAndGCContent: "zero or more than one input sequence"
edaseq normalization hg38 biomart org.db
updated 7.1 years ago by ▴ 980 • written 7.1 years ago by • 0
0
votes
2
replies
1.7k
views
problem running featurecounts using hg38 in-built annotation
featurecounts hg38
7.6 years ago raf4 ▴ 30
2
votes
7
replies
3.0k
views
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv
updated 7.8 years ago by 43k • written 7.8 years ago by • 0
0
votes
4
replies
2.5k
views
Rsubread function buildindex cannot handle the GRCh38.p7 reference from NCBI
rsubread ncbi GRCh38 hg38
updated 8.1 years ago by ★ 3.6k • written 8.2 years ago by • 0
1
vote
1
reply
2.4k
views
package ‘BSgenome.Hsapiens.UCSC.hg38’ is not available (for R version 3.1.2)
bsgenome hg38 r version 3.1.2
updated 9.3 years ago by 67k • written 9.3 years ago by • 0
9 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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