Showing : hgu133a • reset
6
votes
5
replies
2.6k
views
Is filtering necessary to extract significant DE genes with limma ?
hgu133a
updated 8.1 years ago by 50k • written 8.1 years ago by ▴ 40
2
votes
3
replies
1.4k
views
unusal expression level values after normalization in Affymetrix microarray experiment
microarray gcrma affy hgu133a normalization
updated 7.1 years ago by 50k • written 7.1 years ago by ▴ 50
2
votes
2
replies
1.2k
views
around 2000 Affy probe set IDs cannot be mapped with Ensembl IDs by BiomaRt
microarray annotation biomart hgu133a
updated 6.9 years ago by 65k • written 6.9 years ago by • 0
2
votes
1
reply
1.0k
views
How to get chip information from annotation databases
bioconductor annotationdata hgu133a
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 260
2
votes
3
replies
2.4k
views
hgu133plus2hsentrezgcdf or hgu133ahsentrezgcdf packages not installing
readaffy frma affy package installation hgu133a
6.1 years ago Chris Mancuso • 0
1
vote
0
replies
1.1k
views
problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.7 years ago Sean Davis 21k
1
vote
3
replies
1.3k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 15.0 years ago by ★ 6.5k • written 15.0 years ago by ▴ 350
1
vote
3
replies
1.9k
views
Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.1 years ago by 65k • written 8.1 years ago by ▴ 40
1
vote
0
replies
1.1k
views
problem in read in file with GEOquery library
hgu133a GEOquery hgu133a GEOquery
12.7 years ago Zhe Liu ▴ 90
0
votes
1
reply
612
views
Environments in affy data packages?
Annotation hgu133a affy Annotation hgu133a affy
updated 21.1 years ago by ★ 2.9k • written 21.1 years ago by ▴ 60
0
votes
0
replies
752
views
RE: gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
20.5 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
1
reply
969
views
gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
updated 20.5 years ago by ★ 2.3k • written 20.5 years ago by ▴ 270
0
votes
1
reply
621
views
non appearing AffyIDs cColor
hgu133a hgu133a
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 250
0
votes
1
reply
914
views
gcrma memory problems in R1.8.1 and R1.9.0-devel
hgu133a gcrma hgu133a gcrma
updated 20.3 years ago by ▴ 720 • written 20.3 years ago by ★ 1.4k
0
votes
1
reply
759
views
affy batch questions
hgu133a hgu133b hgu133a hgu133b
updated 21.4 years ago by ★ 13k • written 21.4 years ago by ▴ 20
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.1 years ago by ▴ 110 • written 12.0 years ago by ▴ 760
0
votes
1
reply
869
views
comparing hgu133a chips with 3mg total RNA to 1mg total RNA
hgu133a gcrma hgu133a gcrma
updated 20.6 years ago by ★ 2.3k • written 20.6 years ago by ★ 1.4k
0
votes
1
reply
716
views
large amount of slides/ out of memory
hgu133a gcrma hgu133a gcrma
updated 19.9 years ago by 65k • written 19.9 years ago by ▴ 210
0
votes
3
replies
859
views
Problems using GO 1.6.0 in Windows
GO hgu133a hgu95av2 GO hgu133a hgu95av2
updated 19.9 years ago by ★ 2.9k • written 19.9 years ago by ▴ 550
0
votes
5
replies
2.0k
views
Combining HGU133A & HGU133B data
hgu133a hgu133b hgu133a hgu133b
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 80
0
votes
5
replies
917
views
How to use datapackage homology
hgu133a rae230a hgu133a rae230a
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 110
0
votes
1
reply
864
views
Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 500
0
votes
1
reply
855
views
annotation - 1 probe with 2 UG ??
Transcription Annotation GO hgu133a probe Transcription Annotation GO hgu133a probe
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 300
0
votes
1
reply
689
views
hgu133aPMID redundancy
Annotation GO hgu133a Annotation GO hgu133a
updated 19.7 years ago by ★ 2.9k • written 19.7 years ago by ▴ 30
0
votes
0
replies
697
views
add a gene symbol colums in an exprSet or a matrix / infinite recursion error message
hgu133a hgu133a
19.6 years ago Florence Combes ▴ 120
0
votes
1
reply
936
views
add a gene symbol colums in an exprSet or a matrix / infinite recursion error message
hgu133a hgu133a
updated 19.6 years ago by ▴ 120 • written 19.6 years ago by ★ 5.5k
0
votes
1
reply
1.1k
views
combining hgu133a hgu133b
hgu133a hgu133b annotate hgu133a hgu133b annotate
updated 19.5 years ago by ★ 1.8k • written 19.5 years ago by ▴ 250
0
votes
1
reply
931
views
MM > PM intensities
hgu133a hgu133a
updated 19.3 years ago by ★ 13k • written 19.3 years ago by ★ 1.3k
0
votes
0
replies
877
views
Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
19.2 years ago Aaron Hamilton ▴ 30
0
votes
0
replies
1.0k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
16.7 years ago Yan Zhang ▴ 130
0
votes
3
replies
1.1k
views
missing GO identifier in hgu133a GO
GO hgu133a hgu133b GO hgu133a hgu133b
updated 21.5 years ago by ★ 5.5k • written 21.5 years ago by ▴ 20
0
votes
1
reply
1.7k
views
Problem reading CEL files
Normalization hgu133a affy Normalization hgu133a affy
20.0 years ago Xia Han ▴ 80
0
votes
1
reply
869
views
affycomp hgu133 assessment error
hgu133a hgu95a affycomp hgu133a hgu95a affycomp
18.9 years ago Ariel Chernomoretz ▴ 380
0
votes
2
replies
883
views
error with results.summary in simpleaffy
Cancer hgu133a probe Cancer hgu133a probe
18.9 years ago Jack Zhu ▴ 30
0
votes
0
replies
676
views
Dealing with artifacts on Affy chips.
Genetics hgu133a Genetics hgu133a
20.0 years ago Gareth Hughes ▴ 20
0
votes
1
reply
712
views
hgu133a cdf package
hgu133a cdf hgu133a cdf
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 720
0
votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.9 years ago by ★ 1.1k
0
votes
1
reply
855
views
common genes between hgu133a and hu6800
Microarray hgu133a hu6800 Microarray hgu133a hu6800
updated 18.9 years ago by ▴ 420 • written 18.9 years ago by ▴ 360
0
votes
1
reply
966
views
filtering for present calls
hgu133a gcrma hgu133a gcrma
updated 18.8 years ago by ▴ 280 • written 18.8 years ago by ▴ 10
0
votes
1
reply
852
views
cdfName/annotation variants for hgu133a?
Annotation hgu133a hgu133b Annotation hgu133a hgu133b
updated 18.8 years ago by 65k • written 18.8 years ago by ▴ 40
0
votes
0
replies
750
views
want to compare hgu133a and hgu133plus2
hgu133a hgu133plus2 affy Resourcerer hgu133a hgu133plus2 affy Resourcerer
18.6 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
585
views
MixtureCDF
Cancer hgu133a2 hgu133a cdf PROcess Cancer hgu133a2 hgu133a cdf PROcess
18.3 years ago Jack Zhu ▴ 30
0
votes
0
replies
741
views
A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a hgu133b gcrma hgu133a hgu133b gcrma
18.1 years ago Li, Aiguo NIH/NCI ▴ 110
0
votes
0
replies
682
views
problem with moe430a version 1.12.0?
hgu133a hgu133plus2 moe430a moe430b rae230b probe hgu133a hgu133plus2 moe430a moe430b
18.0 years ago MARIA STALTERI ▴ 160
0
votes
0
replies
609
views
alternative CDF
hgu133a hgu133plus2 cdf hgu133a hgu133plus2 cdf
18.0 years ago Tarca, Adi ▴ 570
0
votes
0
replies
1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
746
views
combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
17.9 years ago Lewin Eisele ▴ 10
0
votes
0
replies
838
views
breast tissue cel files
hgu133a ArrayExpress hgu133a ArrayExpress
17.8 years ago Rafael A. Irizarry ★ 2.3k
0
votes
5
replies
1.3k
views
Missing chromosomal locations in hgu133a package
hgu133a AnnBuilder safe hgu133a AnnBuilder safe
updated 17.8 years ago by ▴ 870 • written 17.8 years ago by ▴ 60
0
votes
1
reply
718
views
justMAS reliability
hgu133a cdf hgu133a cdf
updated 18.9 years ago by ★ 1.1k • written 18.9 years ago by ▴ 30
50 results • Page 1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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