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hic
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366
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Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
11 months ago
xubeisi
• 0
0
votes
0
replies
475
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
18 months ago
Ankit
▴ 20
0
votes
3
replies
578
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 13 months ago by
merve.sahn
• 0 • written 2.6 years ago by
mtS
• 0
0
votes
0
replies
314
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
2.6 years ago
changxu.fan
▴ 10
1
vote
7
replies
1.1k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 2.8 years ago by
Aaron Lun
★ 28k • written 2.8 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
525
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 3.1 years ago by
Aaron Lun
★ 28k • written 3.1 years ago by
girardot
• 0
0
votes
1
reply
509
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 3.7 years ago by
Kevin Blighe
3.8k • written 3.7 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.2k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 4.4 years ago by
bioparticles.melly
• 0 • written 4.4 years ago by
m.t.lorenc
• 0
0
votes
9
replies
925
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 4.5 years ago by
Aaron Lun
★ 28k • written 4.5 years ago by
mictadlo
▴ 10
0
votes
1
reply
588
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
4.5 years ago
mictadlo
▴ 10
1
vote
1
reply
944
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 4.8 years ago by
Aaron Lun
★ 28k • written 4.8 years ago by
gryderart
• 0
2
votes
1
reply
785
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
hwick1
▴ 20
0
votes
8
replies
1.1k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
hwick1
▴ 20
2
votes
2
replies
1.1k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
5.8 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.3k
views
GOTHiC hg19 error
GOTHiC
hic
7.7 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
1.8k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
7.7 years ago
Bogdan
▴ 660
16 results • Page
1 of 1
Recent ...
Replies
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
ansleyharralson
• 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…
Comment: WGCNA: many over and under-expressed features in modules of a signed network
by
andres.firrincieli
▴ 50
answered in Biostars: https://www.biostars.org/p/9564943/
Comment: Multitasking and Rbwa
by
Jean-Philippe Fortin
• 0
Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…
Comment: biomaRt error: database disk image is malformed
by
Emile
• 0
UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…
Votes
Answer: Question on constructing design matrix and defining contrasts for analysis
WGCNA: many over and under-expressed features in modules of a signed network
Comment: WGCNA: many over and under-expressed features in modules of a signed network
Answer: DESeq2 or edgeR for Presence and Absence of Proteins
Answer: Normalized counts from LRT or Wald test?
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