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Comment: Use with_go along with other filters in getBM function
by
RuBBiT0
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10
Thank you! I think that makes much sense to me.
Comment: Interpret plot from DiffBind
by
Rory Stark
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4.9k
Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Comment: Interpret plot from DiffBind
by
Chris
•
0
Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?
Answer: List of Deprecated Packages for Bioc3.17
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shepherl
3.5k
lfa and gcatest have been reinstated.
Comment: Remove duplicate genera in DEseq output?
by
Lluís Revilla Sancho
▴
710
How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…
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