Bioconductor Hic

Showing : hic • reset

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286

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JuicerTools HiC HiCDCPlus Java Juicer

written 4 months ago by IsMM • 0

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787

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HiC Epigenetics HiCHIP ChIPSeq

22 months ago xubeisi • 0

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804

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HOMER HiCUP BAM HiC

2.4 years ago Ankit ▴ 20

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829

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 24 months ago by merve.sahn • 0 • written 3.5 years ago by mtS • 0

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546

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HiC hicrep HiCcompare

3.5 years ago changxu.fan ▴ 20

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1.6k

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diffHic GenomicInteractions edgeR HiC cooler

updated 3.7 years ago by Aaron Lun ★ 28k • written 3.7 years ago by Marco Blanchette ▴ 30

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825

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diffHic HiC InteractionSet

updated 4.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by girardot • 0

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852

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HiCompare HiC cool

updated 4.6 years ago by Kevin Blighe ★ 3.9k • written 4.6 years ago by c.chakraborty • 0

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1.5k

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hic

updated 5.3 years ago by bioparticles.melly • 0 • written 5.3 years ago by m.t.lorenc • 0

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1.5k

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diffhic gothic hicup hic-c hic

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by mictadlo ▴ 10

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900

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hic diffhic gothic hicup hic-c

5.4 years ago mictadlo ▴ 10

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1.3k

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hic diffhic chromatin bedpe

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by gryderart • 0

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1.2k

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diffhic hic interactionset contactmatrix inflate

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.6k

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diffhic hic

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by hwick1 ▴ 20

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1.4k

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diffhic hicpro hic

6.7 years ago sergio.espeso-gil • 0

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1.6k

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GOTHiC hic

8.6 years ago Nathan Sheffield ▴ 10

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2.4k

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HiTC gothic diffhic HiC

8.6 years ago Bogdan ▴ 670

17 results • Page 1 of 1

Recent ...

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0