4
votes
20
replies
2.4k
views
0
votes
3
replies
1.6k
views
8.6 years ago
Nathan Sheffield
▴
10
1
vote
7
replies
1.6k
views
updated 3.7 years ago by
Aaron Lun
★
28k
•
written 3.7 years ago by
Marco Blanchette
▴
30
0
votes
8
replies
1.6k
views
0
votes
3
replies
1.5k
views
updated 5.3 years ago by
bioparticles.melly
•
0
•
written 5.3 years ago by
m.t.lorenc
•
0
0
votes
9
replies
1.5k
views
2
votes
2
replies
1.4k
views
1
vote
1
reply
1.3k
views
2
votes
1
reply
1.2k
views
0
votes
1
reply
900
views
0
votes
1
reply
852
views
updated 4.6 years ago by
Kevin Blighe
★
3.9k
•
written 4.6 years ago by
c.chakraborty
•
0
0
votes
3
replies
829
views
updated 24 months ago by
merve.sahn
•
0
•
written 3.5 years ago by
mtS
•
0
0
votes
1
reply
826
views
0
votes
0
replies
804
views
0
votes
0
replies
788
views
22 months ago
xubeisi
•
0
0
votes
0
replies
546
views
3.5 years ago
changxu.fan
▴
20
0
votes
2
replies
286
views
Recent ...
Replies
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★
4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴
10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★
4.0k
I do not know this decontamination tool you use but generally:
If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Votes
Awards
• All
Locations
• All
United States, 2 minutes ago
United States, 2 minutes ago
France, 5 minutes ago
EMBL Heidelberg, 11 minutes ago
United States, 14 minutes ago
United States, 2 minutes ago
United States, 2 minutes ago
France, 5 minutes ago
EMBL Heidelberg, 11 minutes ago
United States, 14 minutes ago
Traffic: 1128 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6