Showing : igraph • reset
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GRanges list convert into igraph format
GRanges igraph
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 670
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528
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coexpression networks
WGCNA igraph
17 months ago María José • 0
0
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1
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1.5k
views
igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 2.7 years ago by 50k • written 5.1 years ago by • 0
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0
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1.1k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
3.3 years ago Chantel • 0
0
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2
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2.9k
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Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
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2
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1.2k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
5.1 years ago Samuel Lee • 0
2
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5
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1.4k
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Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.2 years ago by ★ 28k • written 5.2 years ago by ▴ 50
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1
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905
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
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989
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igraph PoTRA error
graph pathways igraph
6.1 years ago genomic8328 ▴ 10
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2
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3.3k
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get vertex xy coords from igraph mst plot
igraph
6.5 years ago Andrew Box ▴ 10
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1
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1.5k
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QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
6.7 years ago lljotall ▴ 10
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2
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2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 6.9 years ago by • 0 • written 8.4 years ago by • 0
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0
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1.6k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
7.3 years ago jan.soderman • 0
0
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0
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961
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
7.9 years ago Abhishek Pratap ▴ 190
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2
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1.2k
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taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.0 years ago by ▴ 470 • written 8.0 years ago by ▴ 40
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1.1k
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read tree fails for large trees
RamiGO R gene ontology igraph
8.2 years ago bkellman • 0
2
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4
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2.7k
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getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 8.3 years ago by 16k • written 8.3 years ago by ▴ 40
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1
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1.9k
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Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 10
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4
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2.0k
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Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 8.8 years ago by ▴ 20 • written 8.8 years ago by ▴ 130
19 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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