Bioconductor Import

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3.0k

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bigwig rtracklayer import granges grangeslist

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

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2.0k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 7 months ago by jacorvar ▴ 40 • written 19 months ago by eraldagjika ▴ 20

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1.7k

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software error BigWig import windows

4.2 years ago • updated 4.1 years ago lsilva.m • 0

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2.6k

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rtracklayer import bed

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by Peter Hickey ▴ 740

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1.4k

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rtracklayer fasta import Biostrings

updated 5.3 years ago by Michael Lawrence ★ 11k • written 5.3 years ago by k.vitting.seerup ▴ 120

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2.4k

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rtracklayer import bed files

8.1 years ago jmr • 0

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832

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ddCt import analysis R qRTPCR

updated 4.8 years ago by Zhang, Jitao David ▴ 120 • written 4.8 years ago by mohammedtoufiq91 ▴ 10

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1.1k

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rtracklayer gff gtf import import.gff3

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by Marlin ▴ 20

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1.4k

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import

2.9 years ago Ofelia • 0

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1.2k

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rtracklayer bigwig import

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by zx8754 ▴ 10

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702

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.gpr raw Agilent MicroarrayData import

updated 2.6 years ago by Gordon Smyth 50k • written 2.6 years ago by irina.st.louis4 • 0

11 results • Page 1 of 1

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Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res by jovel_juan ▴ 30

enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…

Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k

SAF files must not have a header.

Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman by xuz • 0

Could you try the latest version (1.40.1) to see how it works, I am not able to replicate the error message on my computer here.

Comment: Not able to install any Bioconductor 3.18 package [unable to access index] by merv ▴ 120

Thanks! I can confirm it is working now - had been broken since sometime yesterday.

Comment: Errors in chromosome annotation-biomaRt by landenshanie ▴ 40

Thank you, I ran your exact code and it correct for Xist, however Ddx3y is still wrongly annotated to chr13 and, like your results, Dusp1 i…

Votes

Answer: Not able to install any Bioconductor 3.18 package [unable to access index]

Seurat/DESeq2 - single cell RNA-seq differential expression

Seurat to SingleCellExperiment Converting error in MAC

Error when converting Seurat to SingleCellExperiment

Comment: unable to access bioconductor packages - qvalue installation failed...

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