Showing : medips • reset
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MEDIPS.meth gives table with NA rpkm values
MEDIPS
updated 4 months ago by 68k • written 4 months ago by • 0
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0
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290
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Batch Correction while implementing QSEA package
qsea MEDIPS MEDIPSData DNAMethylation
10 months ago User3088 • 0
0
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0
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482
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medips-output
ngsReports MEDIPS
21 months ago Researcher ▴ 10
9
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18
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4.7k
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 23 months ago by ▴ 280 • written 8.7 years ago by ▴ 20
0
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1
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632
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MEDIPS - covariate
MEDIPS
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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0
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632
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CpG coverage with MEDIPS
MEDIPS CpG
2.3 years ago greta • 0
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0
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928
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How to use MeDIPS with BEDPE format input?
R medip-seq MEDIPS
2.8 years ago Luomeng • 0
1
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4
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1.9k
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QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM edgeR qsea MEDIPS
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 20
0
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2
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1.4k
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MBD-seq non model species
MethylSeq ramwas MEDIPS qsea
updated 3.3 years ago by • 0 • written 3.4 years ago by ▴ 20
0
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3
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1.6k
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MEDIPS - error using MEDIPS.CpGenrich
MEDIPS
updated 10 months ago by • 0 • written 3.9 years ago by • 0
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0
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1.1k
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MEDIPS.meth output
MEDIPS edgeR l
4.2 years ago Aranzazu • 0
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0
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961
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MEDIPS - export wig with normalized counts
MEDIPS
4.8 years ago lshepard ▴ 40
2
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4
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1.4k
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MEDIPS results differ with sample ordering
MEDIPS edgeR
updated 5.6 years ago by ▴ 570 • written 5.9 years ago by ▴ 60
2
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1
reply
1.3k
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MEDIPS - Error in MEDIPS.CpGenrich
MEDIPS
updated 5.8 years ago by ▴ 570 • written 5.8 years ago by ▴ 20
1
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1
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1.1k
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MEDIPS.CpGenrich now that RangedData is deprecated
MEDIPS RangedData GenomicRanges
updated 5.8 years ago by ▴ 570 • written 5.8 years ago by • 0
1
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2
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1.6k
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Read counts between QSEA and MEDIPs
qsea medips
updated 5.8 years ago by ▴ 280 • written 5.8 years ago by • 0
4
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5
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2.0k
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Extracting normalized counts in MEDIPS
MEDIPS MeDIP-seq
updated 4.2 years ago by ▴ 20 • written 6.1 years ago by ▴ 40
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0
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971
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Why does MEDIPS only import read 1 when paired=TRUE for MEDIPS.createSet()function ?
#MEDIPS MEDIPS
6.1 years ago agm • 0
1
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1
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1.2k
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sva correction for MEDIPS
MEDIPS svaseq sva
updated 6.9 years ago by ▴ 570 • written 6.9 years ago by • 0
0
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0
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1.3k
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error importing bam file for MEDIPS analysis
MEDIPS bamfile
updated 6.9 years ago by 0 • written 7.1 years ago by • 0
1
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2
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1.4k
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Comparing more than 2 experimental groups with MEDIPS?
medips medip-seq dna methylation dmr analysis
updated 7.0 years ago by ▴ 570 • written 7.0 years ago by • 0
0
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2
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1.5k
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create.set on MEDIPS
medips createset
updated 7.1 years ago by ▴ 570 • written 7.1 years ago by • 0
0
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4
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1.9k
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CpG density in MEDIPS
CpG MEDIPS
7.2 years ago saripalligautam86 ▴ 10
0
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0
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1.5k
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Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools QSEA MEDIPS
7.2 years ago saripalligautam86 ▴ 10
0
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3
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1.5k
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Coupling set error in MEDIPS
medips coupling set error cpg density
7.2 years ago saripalligautam86 ▴ 10
0
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0
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956
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CouplingSet error in MeDIPS
MEDIPS coupling set error
7.2 years ago saripalligautam86 ▴ 10
0
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3
replies
1.9k
views
MEDIPS - Annotation output explanation
MEDIPS Output
7.6 years ago vjain • 0
1
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6
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2.8k
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MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
updated 7.7 years ago by ▴ 570 • written 7.7 years ago by • 0
3
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1
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1.6k
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RMS question in MEDIPS
RMS RPKM MEDIPS
updated 7.8 years ago by ▴ 570 • written 7.8 years ago by ▴ 10
0
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6
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2.6k
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MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medips medip-seq
9.3 years ago • updated 8.5 years ago stb • 0
3
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5
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2.3k
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CNV parameter not working - MEDIPS
medips medip-seq error lukas
updated 8.6 years ago by ▴ 280 • written 8.6 years ago by • 0
1
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1
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1.6k
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Window size for MEDIPS
medips medip-seq peak finding luckas
updated 8.6 years ago by ▴ 570 • written 8.6 years ago by • 0
0
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2
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2.1k
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MeQA and MEDIPS
bioconductor meqa medips
updated 8.6 years ago by • 0 • written 9.6 years ago by • 0
0
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1
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1.5k
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How does the function MEDIPS.CpGenrich work?
medips
updated 8.6 years ago by ▴ 570 • written 8.6 years ago by • 0
0
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1
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1.9k
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Error raised during execution of MEDIPS package
medips
updated 8.8 years ago by ▴ 570 • written 8.8 years ago by • 0
0
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1
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1.4k
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MEDIPS: case study with different replicate numbers of control and case
MEDIPS
updated 8.9 years ago by ▴ 570 • written 8.9 years ago by • 0
0
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1
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1.6k
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Insertion size when using 'paired' in MEDIPS.createSet()
medips R medip-seq pair-end reads
updated 9.0 years ago by ▴ 570 • written 9.0 years ago by • 0
0
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1
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1.4k
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How to make my custom genome available in MEDIPS?
MEDIPS
9.1 years ago Vijay Lakhujani • 0
0
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1
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1.7k
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similar problem installing MEDIPS on Ubuntu 14.04
installation medips
9.1 years ago avilella ▴ 10
0
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1
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1.6k
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MEDIPS - do reads without CG's get filtered out prior to analysis?
medips
updated 9.2 years ago by ▴ 570 • written 9.2 years ago by • 0
0
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1
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1.5k
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How does the 'paired' argument works in MeDIPS 1.23.2
medips medip-seq R pair-end reads
updated 9.2 years ago by ▴ 570 • written 9.2 years ago by • 0
0
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1
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1.6k
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Gene Symbol Annotation
medips
updated 9.3 years ago by ▴ 570 • written 9.3 years ago by • 0
0
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1
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1.5k
views
TMM Normalization within MEDIPS ups some zero counts, is this normal?
MEDIPS
updated 9.4 years ago by ▴ 570 • written 9.4 years ago by • 0
1
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1
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1.9k
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MeDIPS and use of the 'bwa' parameter
R medip-seq medips bwa
updated 9.4 years ago by ▴ 570 • written 9.4 years ago by • 0
1
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6
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2.0k
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Alternative methylation contexts with MEDIPS?
MEDIPS
updated 9.4 years ago by ▴ 280 • written 9.4 years ago by ▴ 90
0
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6
replies
2.3k
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MEDIPS - input
MEDIPS input
9.5 years ago GFM ▴ 20
0
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1
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1.6k
views
Questions for MEDIPS getPairedGRange function in MEDIPS.readRegionsFile.R
medips bam file
9.5 years ago fkuo ▴ 10
0
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6
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2.6k
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MEDIPS: Number of windows tested in Paired-end data set
medips r
9.7 years ago peter.mcerlean • 0
0
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5
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2.2k
views
MEDIPS genome Vs createROIset significance issue
medips r
9.8 years ago peter.mcerlean • 0
0
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1
reply
2.1k
views
Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R
updated 9.8 years ago by ▴ 570 • written 9.8 years ago by • 0
105 results • Page 1 of 3
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For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
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You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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