Showing : methyanalysis • reset
1
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 24 months ago by 21k • written 7.2 years ago by • 0
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6
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3.0k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.2 years ago by 65k • written 10.2 years ago by ★ 13k
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2
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1.7k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.3 years ago by ▴ 440 • written 11.3 years ago by ★ 13k
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2
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1.3k
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.2 years ago by ▴ 440 • written 11.2 years ago by ▴ 20
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8
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2.2k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.2 years ago by ▴ 160 • written 10.2 years ago by ★ 13k
1
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5
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1.3k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.2 years ago by ▴ 80 • written 9.2 years ago by ▴ 370
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4.1k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.2 years ago by ▴ 80 • written 9.2 years ago by ▴ 370
1
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13
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2.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
8.6 years ago jdangelo • 0
4
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10
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4.4k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.2 years ago by ▴ 740 • written 8.2 years ago by ▴ 50
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925
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problem with identifySigDMR command
methyAnalysis
7.8 years ago yuping.zhang • 0
1
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2
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1.4k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 5.4 years ago by ★ 1.3k • written 5.4 years ago by • 0
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1
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1.1k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.3 years ago by 21k • written 11.3 years ago by ▴ 10
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0
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1.2k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
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4
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2.7k
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
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0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.3 years ago mcahn • 0
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621
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
3.5 years ago coobzie • 0
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0
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1.7k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.2 years ago Ed Schwalbe ▴ 20
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999
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.6 years ago Shicheng Guo • 0
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0
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1.7k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.2 years ago Allegra Petti ▴ 120
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1.7k
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methyAnalysis error with example data
methyanalysis
8.0 years ago Tom ▴ 10
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0
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813
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.5 years ago charleneee95 • 0
21 results • Page 1 of 1
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Mike Smith ★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data by Robert Castelo ★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results by ATpoint ★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data by ATpoint ★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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