Bioconductor Methylationarrayanalysis

Showing : methylationarrayanalysis • reset

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254

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DNAMethylation limma methylationArrayAnalysis

9 days ago • updated 3 days ago hortense96 • 0

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272

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MethylationArray methylationArrayAnalysis ChAMP

updated 9 weeks ago by James W. MacDonald 65k • written 9 weeks ago by david.cheishvili • 0

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443

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

11 weeks ago mikat • 0

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613

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BatchEffect limma methylationArrayAnalysis

updated 4 months ago by Gordon Smyth 50k • written 4 months ago by kyj2226 • 0

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659

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MethylationArrayData methylationArrayAnalysis

5 months ago aldea85 • 0

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719

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MethylationArray methylationArrayAnalysis

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by henry-keen • 0

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504

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MethylationArrayData methylationArrayAnalysis

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by hayleyw • 0

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2.4k

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minfiDataEPIC methylationArrayAnalysis

updated 9 months ago by ATpoint ★ 4.0k • written 9 months ago by rae.alshammari ▴ 10

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574

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RRBSdata edgeR methylationArrayAnalysis

9 months ago Krzysztof • 0

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629

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MethylationArrayData methylationArrayAnalysis

10 months ago Irene • 0

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552

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 12 months ago by belinda.phipson ▴ 40 • written 12 months ago by Grace • 0

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1.0k

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champ.load epicarray ChAMP methylationArrayAnalysis

12 months ago • updated 11 months ago arisarkar88 ▴ 40

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1.4k

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human methylationArrayAnalysis

updated 3 months ago by s.malik • 0 • written 13 months ago by jenniewoo ▴ 70

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2.7k

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methylationArrayAnalysis

updated 9 months ago by olatunbosun.arowolo • 0 • written 18 months ago by shuangshuang • 0

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2.4k

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MethylationArray methylationArrayAnalysis ChAMP

updated 6 months ago by dorota.komar • 0 • written 3.4 years ago by Ankit ▴ 20

15 results • Page 1 of 1

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Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to Michael Love 41k

Scholar to James W. MacDonald 65k

Supporter to JKim • 0