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Showing :
parallel
•
reset
0
votes
0
replies
811
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
2.6 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.3k
views
Running limma in parallel
parallel
R
limma
EWAS
updated 2.9 years ago by
Gordon Smyth
52k • written 2.9 years ago by
Lorenzo
• 0
3
votes
4
replies
1.8k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 3.1 years ago by
Rory Stark
★ 5.2k • written 3.4 years ago by
eggrandio
• 0
1
vote
1
reply
1.8k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
Victor
• 0
7
votes
4
replies
2.0k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
gabriel.hoffman
▴ 170
0
votes
1
reply
683
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
5.2 years ago
ieuangw
• 0
0
votes
4
replies
2.1k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
symbiologist
• 0
6
votes
12
replies
2.3k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
6.0 years ago
foehn
▴ 100
0
votes
0
replies
1.4k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.9 years ago
genomic8328
▴ 10
0
votes
1
reply
1.2k
views
DiffBind count warning
diffbind
parallel
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
ghosos
• 0
1
vote
5
replies
2.9k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
eggrandio
• 0
3
votes
3
replies
1.8k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
alserg
▴ 280
1
vote
0
replies
1.7k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.1 years ago
s.munster
▴ 40
2
votes
10
replies
2.4k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
7.5 years ago • updated 7.4 years ago
felix.ernst
• 0
2
votes
3
replies
3.1k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.7 years ago
davide risso
▴ 980
1
vote
1
reply
1.7k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
maltethodberg
▴ 180
4
votes
1
reply
1.5k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
1.9k
views
Multithreading problems with qalign
quasr
parallel
updated 8.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
kirt.onthank
• 0
0
votes
1
reply
1.4k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
dan.gatti
• 0
0
votes
1
reply
1.4k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
9.0 years ago
rna seq
▴ 90
0
votes
9
replies
2.6k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
rna seq
▴ 90
2
votes
4
replies
1.6k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 9.1 years ago by
andrea.rau
▴ 80 • written 9.1 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.6k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.1 years ago
ben.ward
▴ 30
0
votes
3
replies
1.9k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
9.2 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.3k
views
Paralelization of maSigPro
maSigPro
parallel
9.3 years ago
gmdc
• 0
0
votes
1
reply
1.5k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.9 years ago
Martin Morgan
25k
1
vote
1
reply
1.2k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
affennacken
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: Identifying potentially associated gene set to drug response using GSVA
by
kl2023gege
• 0
Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Votes
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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