Bioconductor Protein

Showing : protein • reset

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624

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protein database glutathionylation PTM

3.7 years ago Camelia • 0

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1.3k

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microarray normalization protein

updated 4.3 years ago by Wolfgang Huber ★ 13k • written 5.7 years ago by keniajin • 0

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1.6k

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Gviz protein visualization UcscTrack protein domains

updated 4.5 years ago by James W. MacDonald 68k • written 4.5 years ago by paul.jaschke ▴ 10

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1.3k

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microarray protein analysis ProteomeProfiler

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by hcnbox • 0

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3.2k

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STRINGdb R protein

updated 5.8 years ago by zhanghongjie000 • 0 • written 6.0 years ago by shahroze786 • 0

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1.0k

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Protein iranges sequencing

6.0 years ago ieuangw • 0

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1.2k

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protein disease pathway analysis pathways

6.6 years ago ረ • 0

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1.3k

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dnaseq pathway analysis protein biomarkers

7.1 years ago emadelhewihy • 0

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1.2k

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R blast blastsequences protein

7.1 years ago andres.susrud • 0

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1.7k

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biostrings iranges sequence alignment protein

updated 8.1 years ago by Michael Lawrence ★ 11k • written 8.1 years ago by Assa Yeroslaviz ★ 1.5k

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2.7k

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biostrings fasta protein

updated 8.1 years ago by James W. MacDonald 68k • written 8.1 years ago by fastabest • 0

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2.7k

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xcms convert protein

updated 8.3 years ago by Johannes Rainer ★ 2.1k • written 8.3 years ago by ray.bacala • 0

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1.4k

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bioinformatics protein variantannotation data integration Job

8.3 years ago stephan.pabinger • 0

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1.7k

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iranges biostrings fasta protein readaastringset

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Assa Yeroslaviz ★ 1.5k

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2.0k

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protein vcf

9.9 years ago dan.gatti • 0

15 results • Page 1 of 1

Recent ...

Replies

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760