Biostar Protein

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144

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protein database glutathionylation PTM

11 months ago Camelia • 0

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460

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microarray normalization protein

updated 18 months ago by Wolfgang Huber 13k • written 2.9 years ago by keniajin • 0

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426

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Gviz protein visualization UcscTrack protein domains

updated 20 months ago by James W. MacDonald 59k • written 20 months ago by paul.jaschke ▴ 10

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287

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microarray protein analysis ProteomeProfiler

updated 2.2 years ago by Gordon Smyth 45k • written 2.2 years ago by hcnbox • 0

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1.3k

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STRINGdb R protein

updated 3.0 years ago by zhanghongjie000 • 0 • written 3.2 years ago by shahroze786 • 0

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406

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Protein iranges sequencing

3.2 years ago ieuangw • 0

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507

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protein disease pathway analysis pathways

3.8 years ago ረ • 0

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574

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dnaseq pathway analysis protein biomarkers

4.3 years ago emadelhewihy • 0

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533

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R blast blastsequences protein

4.3 years ago andres.susrud • 0

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699

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biostrings iranges sequence alignment protein

updated 5.3 years ago by Michael Lawrence 11k • written 5.3 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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biostrings fasta protein

updated 5.3 years ago by James W. MacDonald 59k • written 5.3 years ago by fastabest • 0

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1.5k

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xcms convert protein

updated 5.5 years ago by Johannes Rainer ★ 1.9k • written 5.5 years ago by ray.bacala • 0

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789

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bioinformatics protein variantannotation data integration Job

5.5 years ago stephan.pabinger • 0

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772

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iranges biostrings fasta protein readaastringset

updated 5.6 years ago by Michael Lawrence 11k • written 5.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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protein vcf

7.1 years ago dan.gatti • 0

15 results • Page 1 of 1

Recent ...

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Answer: Question on RNA-Seq single sample data analysis in EdgeR by Gordon Smyth 45k

Yes, it is necessary to run `calcNormFactors`, as it always is for any DE analysis. It would also be sensible to filter non-expressed genes…

Comment: How to run GSVA with partially NA genes by blakebowen • 0

I was a little worried about discarding so many genes, although sounds like this can't be helped. The results are still quite useful so I t…

Comment: ashr vs apeglm for interaction data by Ali Barry ▴ 30

Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…

Comment: ashr vs apeglm for interaction data by Michael Love 37k

I see why apeglm is conservative— the dispersion is very high within group. An idea would be to use ashr but do some additional filtering …

Comment: How to figure out the FC value from Limma by ATpoint ★ 1.2k

That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.

Votes

Answer: How to run GSVA with partially NA genes

Answer: How to properly use DESeq2 for an experiment

Comment: ashr vs apeglm for interaction data

Comment: How to figure out the FC value from Limma

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